Canonical Allele Identifier: CA59797669

Gene: SCN1A

Linked Data

• ClinVar Variation Id: 1210876
• ClinVar RCV Id: RCV001581598 ; RCV003771766
• dbSNP Id: rs761426364
• gnomAD v2: 2-166847766-T-C
• gnomAD v4: 2-165991256-T-C
• MyVariant Identifiers: chr2:g.166847766T>C (hg19) ; chr2:g.165991256T>C (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.165991256T>C , CM000664.2:g.165991256T>C	GRCh38
NC_000002.11:g.166847766T>C , CM000664.1:g.166847766T>C	GRCh37
NC_000002.10:g.166556012T>C	NCBI36
NG_011906.1:g.87384A>G , LRG_8:g.87384A>G

Transcript Alleles

HGVS	Amino-acid change
ENST00000689288.1:c.*4055A>G	ENSP00000509637.1:n.*4055A>G
ENST00000303395.9:c.6019A>G	ENSP00000303540.4:p.Lys2007Glu
ENST00000635750.1:c.5986A>G	ENSP00000490799.1:p.Lys1996Glu
ENST00000635776.1:c.*2852A>G	ENSP00000490692.1:n.*2852A>G
ENST00000636194.1:c.*3512A>G	ENSP00000490288.1:n.*3512A>G
ENST00000637038.1:c.2881A>G
ENST00000637988.1:c.5986A>G	ENSP00000490780.1:p.Lys1996Glu
ENST00000640036.1:c.5986A>G	ENSP00000491573.1:p.Lys1996Glu
ENST00000641575.1:c.5983A>G	ENSP00000492917.1:p.Lys1995Glu
ENST00000641603.1:c.5737A>G	ENSP00000492945.1:p.Lys1913Glu
ENST00000641996.1:c.*5573A>G	ENSP00000493054.1:n.*5573A>G
ENST00000671940.1:c.*3962A>G	ENSP00000500336.1:n.*3962A>G
ENST00000673490.1:n.8492A>G
ENST00000674923.1:c.6019A>G MANE Select	ENSP00000501589.1:p.Lys2007Glu
ENST00000303395.8:c.6019A>G	ENSP00000303540.4:p.Lys2007Glu
ENST00000375405.7:c.5986A>G	ENSP00000364554.3:p.Lys1996Glu
ENST00000409050.1:c.5935A>G	ENSP00000386312.1:p.Lys1979Glu
ENST00000423058.6:c.6019A>G	ENSP00000407030.2:p.Lys2007Glu
NM_001165963.1:c.6019A>G	NP_001159435.1:p.Lys2007Glu
NM_001165964.1:c.5935A>G	NP_001159436.1:p.Lys1979Glu
NM_001202435.1:c.6019A>G	NP_001189364.1:p.Lys2007Glu
NM_006920.4:c.5986A>G , LRG_8t1:c.5986A>G	NP_008851.3:p.Lys1996Glu
NR_110598.1:n.176-24357T>C
XM_011511598.1:c.6019A>G	XP_011509900.1:p.Lys2007Glu
XM_011511599.1:c.6019A>G	XP_011509901.1:p.Lys2007Glu
XM_011511600.1:c.6019A>G	XP_011509902.1:p.Lys2007Glu
XM_011511601.1:c.6019A>G	XP_011509903.1:p.Lys2007Glu
XM_011511602.1:c.6019A>G	XP_011509904.1:p.Lys2007Glu
XM_011511603.1:c.6016A>G	XP_011509905.1:p.Lys2006Glu
XM_011511604.1:c.5986A>G	XP_011509906.1:p.Lys1996Glu
XM_011511605.1:c.5983A>G	XP_011509907.1:p.Lys1995Glu
XM_011511606.1:c.5935A>G	XP_011509908.1:p.Lys1979Glu
XM_011511607.1:c.5737A>G	XP_011509909.1:p.Lys1913Glu
NM_001165963.2:c.6019A>G	NP_001159435.1:p.Lys2007Glu
NM_001165964.2:c.5935A>G	NP_001159436.1:p.Lys1979Glu
NM_001202435.2:c.6019A>G	NP_001189364.1:p.Lys2007Glu
NM_001353948.1:c.6019A>G	NP_001340877.1:p.Lys2007Glu
NM_001353949.1:c.5986A>G	NP_001340878.1:p.Lys1996Glu
NM_001353950.1:c.5986A>G	NP_001340879.1:p.Lys1996Glu
NM_001353951.1:c.5986A>G	NP_001340880.1:p.Lys1996Glu
NM_001353952.1:c.5986A>G	NP_001340881.1:p.Lys1996Glu
NM_001353954.1:c.5983A>G	NP_001340883.1:p.Lys1995Glu
NM_001353955.1:c.5983A>G	NP_001340884.1:p.Lys1995Glu
NM_001353957.1:c.5935A>G	NP_001340886.1:p.Lys1979Glu
NM_001353958.1:c.5935A>G	NP_001340887.1:p.Lys1979Glu
NM_001353960.1:c.5932A>G	NP_001340889.1:p.Lys1978Glu
NM_001353961.1:c.3577A>G	NP_001340890.1:p.Lys1193Glu
NM_006920.5:c.5986A>G	NP_008851.3:p.Lys1996Glu
NR_148667.1:n.6455A>G
XR_001738883.1:n.6469A>G
XR_001738884.1:n.6441A>G
NM_001165963.3:c.6019A>G	NP_001159435.1:p.Lys2007Glu
NM_001165964.3:c.5935A>G	NP_001159436.1:p.Lys1979Glu
NM_001202435.3:c.6019A>G	NP_001189364.1:p.Lys2007Glu
NM_001353948.2:c.6019A>G	NP_001340877.1:p.Lys2007Glu
NM_001353949.2:c.5986A>G	NP_001340878.1:p.Lys1996Glu
NM_001353950.2:c.5986A>G	NP_001340879.1:p.Lys1996Glu
NM_001353951.2:c.5986A>G	NP_001340880.1:p.Lys1996Glu
NM_001353952.2:c.5986A>G	NP_001340881.1:p.Lys1996Glu
NM_001353954.2:c.5983A>G	NP_001340883.1:p.Lys1995Glu
NM_001353955.2:c.5983A>G	NP_001340884.1:p.Lys1995Glu
NM_001353957.2:c.5935A>G	NP_001340886.1:p.Lys1979Glu
NM_001353958.2:c.5935A>G	NP_001340887.1:p.Lys1979Glu
NM_001353960.2:c.5932A>G	NP_001340889.1:p.Lys1978Glu
NM_001353961.2:c.3577A>G	NP_001340890.1:p.Lys1193Glu
NM_006920.6:c.5986A>G	NP_008851.3:p.Lys1996Glu
NR_148667.2:n.6436A>G
NM_001165963.4:c.6019A>G MANE Select	NP_001159435.1:p.Lys2007Glu