Canonical Allele Identifier: CA5121188
Gene: SPTLC1 HGNC NCBI

Linked Data

ClinVar Variation Id: 388906
dbSNP Id: rs748723735
gnomAD v2: 9-94794767-C-A
gnomAD v3: 9-92032485-C-A
gnomAD v4: 9-92032485-C-A

Genomic Alleles

HGVS Genome Assembly
NC_000009.12:g.92032485C>A , CM000671.2:g.92032485C>A GRCh38
NC_000009.11:g.94794767C>A , CM000671.1:g.94794767C>A GRCh37
NC_000009.10:g.93834588C>A NCBI36
NG_007950.1:g.87924G>T , LRG_272:g.87924G>T

Transcript Alleles

HGVS Amino-acid Change
ENST00000686600.1:c.*114G>T ENSP00000509268.1:n.*114G>T
ENST00000686799.1:n.1726G>T
ENST00000687427.1:c.*158G>T ENSP00000509426.1:n.*158G>T
ENST00000687817.1:c.*3800G>T ENSP00000508926.1:n.*3800G>T
ENST00000687972.1:c.1462G>T ENSP00000509208.1:p.Ala488Ser
ENST00000689261.1:n.1309G>T
ENST00000689401.1:c.*1652G>T ENSP00000510251.1:n.*1652G>T
ENST00000690095.1:n.1790G>T
ENST00000690139.1:c.*1103G>T ENSP00000510483.1:n.*1103G>T
ENST00000692458.1:n.2040G>T
ENST00000262554.7:c.1402G>T MANE Select ENSP00000262554.2:p.Ala468Ser
ENST00000642671.1:c.1629+2325G>T ENSP00000495764.1:n.1629+2325G>T
ENST00000643599.1:c.1396+2325G>T ENSP00000494770.1:n.1396+2325G>T
ENST00000644140.1:c.*1143G>T ENSP00000493933.1:n.*1143G>T
ENST00000646481.1:c.1260+2325G>T ENSP00000496627.1:n.1260+2325G>T
ENST00000646534.1:c.*1205G>T ENSP00000495388.1:n.*1205G>T
ENST00000262554.6:c.1402G>T ENSP00000262554.2:p.Ala468Ser
ENST00000469778.1:n.359G>T
NM_001281303.1:c.1370G>T NP_001268232.1:p.Ser457Ile
NM_006415.3:c.1402G>T NP_006406.1:p.Ala468Ser
XM_011518139.1:c.937G>T XP_011516441.1:p.Ala313Ser
XM_011518139.3:c.937G>T XP_011516441.1:p.Ala313Ser
XM_017014200.2:c.1036G>T XP_016869689.1:p.Ala346Ser
XM_017014201.2:c.1036G>T XP_016869690.1:p.Ala346Ser
XM_024447378.1:c.937G>T XP_024303146.1:p.Ala313Ser
XM_024447379.1:c.937G>T XP_024303147.1:p.Ala313Ser
XR_002956744.1:n.1552G>T
NM_006415.4:c.1402G>T MANE Select NP_006406.1:p.Ala468Ser
NM_001281303.2:c.1370G>T NP_001268232.1:p.Ser457Ile
NM_001368272.1:c.1036G>T NP_001355201.1:p.Ala346Ser
NM_001368273.1:c.937G>T NP_001355202.1:p.Ala313Ser