Canonical Allele Identifier: CA366742776

Gene: PMS2

Linked Data

• ClinVar Variation Id: 2724814
• ClinVar RCV Id: RCV003595395
• dbSNP Id: rs1554298669
• MyVariant Identifiers: chr7:g.6029461C>A (hg19) ; chr7:g.5989830C>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5989830C>A , CM000669.2:g.5989830C>A	GRCh38
NC_000007.13:g.6029461C>A , CM000669.1:g.6029461C>A	GRCh37
NC_000007.12:g.5995987C>A	NCBI36
NG_008466.1:g.24277G>T , LRG_161:g.24277G>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000699814.2:c.*510G>T	ENSP00000514615.2:n.*510G>T
ENST00000699840.2:c.1111G>T	ENSP00000514638.2:p.Val371Phe
ENST00000699930.2:c.1006G>T	ENSP00000514695.2:p.Val336Phe
ENST00000406569.8:c.1114G>T	ENSP00000514464.1:p.Val372Phe
ENST00000644110.2:c.*708G>T	ENSP00000496392.2:n.*708G>T
ENST00000699752.1:c.988+2143G>T	ENSP00000514561.1:n.988+2143G>T
ENST00000699753.1:c.*535G>T	ENSP00000514562.1:n.*535G>T
ENST00000699754.1:c.916G>T	ENSP00000514563.1:p.Val306Phe
ENST00000699755.1:c.*513G>T	ENSP00000514564.1:n.*513G>T
ENST00000699756.1:c.*701G>T	ENSP00000514565.1:n.*701G>T
ENST00000699757.1:c.*371G>T	ENSP00000514566.1:n.*371G>T
ENST00000699758.1:c.*371G>T	ENSP00000514567.1:n.*371G>T
ENST00000699759.1:n.1968G>T
ENST00000699760.1:c.796G>T	ENSP00000514568.1:p.Val266Phe
ENST00000699761.1:c.709G>T	ENSP00000514569.1:p.Val237Phe
ENST00000699762.1:c.541G>T	ENSP00000514570.1:p.Val181Phe
ENST00000699763.1:c.*204G>T	ENSP00000514571.1:n.*204G>T
ENST00000699764.1:c.1114G>T	ENSP00000514572.1:p.Val372Phe
ENST00000699765.1:c.*210G>T	ENSP00000514573.1:n.*210G>T
ENST00000699766.1:c.1114G>T	ENSP00000514574.1:p.Val372Phe
ENST00000699767.1:c.1114G>T	ENSP00000514575.1:p.Val372Phe
ENST00000699768.1:c.1114G>T	ENSP00000514576.1:p.Val372Phe
ENST00000699811.1:c.709G>T	ENSP00000514614.1:p.Val237Phe
ENST00000699813.1:n.1227G>T
ENST00000699814.1:c.737G>T
ENST00000699815.1:c.*606G>T	ENSP00000514616.1:n.*606G>T
ENST00000699816.1:c.709G>T	ENSP00000514617.1:p.Val237Phe
ENST00000699817.1:c.*708G>T	ENSP00000514618.1:n.*708G>T
ENST00000699818.1:c.709G>T	ENSP00000514619.1:p.Val237Phe
ENST00000699819.1:c.*271G>T	ENSP00000514620.1:n.*271G>T
ENST00000699820.1:c.1114G>T	ENSP00000514621.1:p.Val372Phe
ENST00000699821.1:c.709G>T	ENSP00000514622.1:p.Val237Phe
ENST00000699822.1:c.*566G>T	ENSP00000514623.1:n.*566G>T
ENST00000699823.1:c.709G>T	ENSP00000514624.1:p.Val237Phe
ENST00000699824.1:c.*617G>T	ENSP00000514625.1:n.*617G>T
ENST00000699825.1:c.583+2143G>T	ENSP00000514626.1:n.583+2143G>T
ENST00000699826.1:c.*513G>T	ENSP00000514627.1:n.*513G>T
ENST00000699827.1:c.946G>T	ENSP00000514628.1:p.Val316Phe
ENST00000699828.1:c.*204G>T	ENSP00000514629.1:n.*204G>T
ENST00000699829.1:c.*615G>T	ENSP00000514630.1:n.*615G>T
ENST00000699830.1:c.*513G>T	ENSP00000514631.1:n.*513G>T
ENST00000699833.1:n.2886G>T
ENST00000699837.1:c.709G>T	ENSP00000514635.1:p.Val237Phe
ENST00000699838.1:c.*1014G>T	ENSP00000514636.1:n.*1014G>T
ENST00000699839.1:c.1300G>T	ENSP00000514637.1:p.Val434Phe
ENST00000699840.1:c.1111G>T	ENSP00000514638.1:p.Val371Phe
ENST00000699916.1:c.*371G>T	ENSP00000514684.1:n.*371G>T
ENST00000699917.1:c.*563G>T	ENSP00000514685.1:n.*563G>T
ENST00000699918.1:c.*615G>T	ENSP00000514686.1:n.*615G>T
ENST00000699919.1:c.*701G>T	ENSP00000514687.1:n.*701G>T
ENST00000699920.1:c.*750G>T	ENSP00000514688.1:n.*750G>T
ENST00000699928.1:c.988+2143G>T	ENSP00000514693.1:n.988+2143G>T
ENST00000699929.1:c.*415G>T	ENSP00000514694.1:n.*415G>T
ENST00000699930.1:c.1006G>T	ENSP00000514695.1:p.Val336Phe
ENST00000699931.1:n.2542G>T
ENST00000699932.1:c.*332G>T	ENSP00000514696.1:n.*332G>T
ENST00000699933.1:n.1094G>T
ENST00000699951.1:c.*210G>T	ENSP00000514706.1:n.*210G>T
ENST00000699952.1:c.803+7496G>T	ENSP00000514707.1:n.803+7496G>T
ENST00000699953.1:c.*221G>T	ENSP00000514708.1:n.*221G>T
ENST00000699954.1:c.*415G>T	ENSP00000514709.1:n.*415G>T
ENST00000265849.12:c.1114G>T MANE Select	ENSP00000265849.7:p.Val372Phe
ENST00000642292.1:c.709G>T	ENSP00000495524.1:p.Val237Phe
ENST00000642456.1:c.709G>T	ENSP00000493814.1:p.Val237Phe
ENST00000643595.1:c.*513G>T	ENSP00000494497.1:n.*513G>T
ENST00000644110.1:c.796G>T	ENSP00000496392.1:p.Val266Phe
ENST00000265849.11:c.1114G>T	ENSP00000265849.7:p.Val372Phe
ENST00000382321.5:c.804-6839G>T	ENSP00000371758.4:n.804-6839G>T
ENST00000406569.7:n.1114G>T
ENST00000441476.6:c.796G>T	ENSP00000392843.2:p.Val266Phe
ENST00000469652.1:n.63-6925G>T
NM_000535.5:c.1114G>T , LRG_161t1:c.1114G>T	NP_000526.1:p.Val372Phe
NR_003085.2:n.1196G>T
XM_006715742.2:c.1108G>T	XP_006715805.1:p.Val370Phe
XM_006715744.2:c.181G>T	XP_006715807.1:p.Val61Phe
XM_011515427.1:c.1159G>T	XP_011513729.1:p.Val387Phe
XM_011515428.1:c.1033+2143G>T	XP_011513730.1:n.1033+2143G>T
XM_011515429.1:c.796G>T	XP_011513731.1:p.Val266Phe
XM_011515430.1:c.796G>T	XP_011513732.1:p.Val266Phe
NM_000535.6:c.1114G>T	NP_000526.2:p.Val372Phe
NM_001322003.1:c.709G>T	NP_001308932.1:p.Val237Phe
NM_001322004.1:c.709G>T	NP_001308933.1:p.Val237Phe
NM_001322005.1:c.709G>T	NP_001308934.1:p.Val237Phe
NM_001322006.1:c.988+2143G>T	NP_001308935.1:n.988+2143G>T
NM_001322007.1:c.796G>T	NP_001308936.1:p.Val266Phe
NM_001322008.1:c.796G>T	NP_001308937.1:p.Val266Phe
NM_001322009.1:c.709G>T	NP_001308938.1:p.Val237Phe
NM_001322010.1:c.583+2143G>T	NP_001308939.1:n.583+2143G>T
NM_001322011.1:c.181G>T	NP_001308940.1:p.Val61Phe
NM_001322012.1:c.181G>T	NP_001308941.1:p.Val61Phe
NM_001322013.1:c.541G>T	NP_001308942.1:p.Val181Phe
NM_001322014.1:c.1114G>T	NP_001308943.1:p.Val372Phe
NM_001322015.1:c.805G>T	NP_001308944.1:p.Val269Phe
NR_136154.1:n.1201G>T
XM_006715744.4:c.181G>T	XP_006715807.1:p.Val61Phe
XM_017012342.2:c.181G>T	XP_016867831.1:p.Val61Phe
XM_024446800.1:c.583+2143G>T	XP_024302568.1:n.583+2143G>T
NM_000535.7:c.1114G>T MANE Select	NP_000526.2:p.Val372Phe
NM_001322003.2:c.709G>T	NP_001308932.1:p.Val237Phe
NM_001322004.2:c.709G>T	NP_001308933.1:p.Val237Phe
NM_001322005.2:c.709G>T	NP_001308934.1:p.Val237Phe
NM_001322006.2:c.988+2143G>T	NP_001308935.1:n.988+2143G>T
NM_001322008.2:c.796G>T	NP_001308937.1:p.Val266Phe
NM_001322009.2:c.709G>T	NP_001308938.1:p.Val237Phe
NM_001322010.2:c.583+2143G>T	NP_001308939.1:n.583+2143G>T
NM_001322011.2:c.181G>T	NP_001308940.1:p.Val61Phe
NM_001322012.2:c.181G>T	NP_001308941.1:p.Val61Phe
NM_001322013.2:c.541G>T	NP_001308942.1:p.Val181Phe
NM_001322014.2:c.1114G>T	NP_001308943.1:p.Val372Phe
NM_001322015.2:c.805G>T	NP_001308944.1:p.Val269Phe
NM_001322007.2:c.796G>T	NP_001308936.1:p.Val266Phe