Canonical Allele Identifier: CA366738070
Gene: PMS2 HGNC NCBI

Linked Data

ClinVar Variation Id: 1489195
dbSNP Id: rs1254554953
gnomAD v2: 7-6022563-G-A
gnomAD v4: 7-5982932-G-A

Genomic Alleles

HGVS Genome Assembly
NC_000007.14:g.5982932G>A , CM000669.2:g.5982932G>A GRCh38
NC_000007.13:g.6022563G>A , CM000669.1:g.6022563G>A GRCh37
NC_000007.12:g.5989089G>A NCBI36
NG_008466.1:g.31175C>T , LRG_161:g.31175C>T

Transcript Alleles

HGVS Amino-acid Change
ENST00000699814.2:c.*1462C>T ENSP00000514615.2:n.*1462C>T
ENST00000699840.2:c.2063C>T ENSP00000514638.2:p.Thr688Ile
ENST00000699930.2:c.1958C>T ENSP00000514695.2:p.Thr653Ile
ENST00000406569.8:c.1678+4155C>T ENSP00000514464.1:n.1678+4155C>T
ENST00000644110.2:c.*1660C>T ENSP00000496392.2:n.*1660C>T
ENST00000699752.1:c.1910C>T ENSP00000514561.1:p.Thr637Ile
ENST00000699753.1:c.*1487C>T ENSP00000514562.1:n.*1487C>T
ENST00000699754.1:c.1868C>T ENSP00000514563.1:p.Thr623Ile
ENST00000699755.1:c.*1465C>T ENSP00000514564.1:n.*1465C>T
ENST00000699756.1:c.*1653C>T ENSP00000514565.1:n.*1653C>T
ENST00000699757.1:c.*1323C>T ENSP00000514566.1:n.*1323C>T
ENST00000699758.1:c.*1323C>T ENSP00000514567.1:n.*1323C>T
ENST00000699759.1:n.2920C>T
ENST00000699760.1:c.1748C>T ENSP00000514568.1:p.Thr583Ile
ENST00000699761.1:c.1661C>T ENSP00000514569.1:p.Thr554Ile
ENST00000699762.1:c.1493C>T ENSP00000514570.1:p.Thr498Ile
ENST00000699763.1:c.*1156C>T ENSP00000514571.1:n.*1156C>T
ENST00000699764.1:c.*384C>T ENSP00000514572.1:n.*384C>T
ENST00000699765.1:c.*1162C>T ENSP00000514573.1:n.*1162C>T
ENST00000699766.1:c.2066C>T ENSP00000514574.1:p.Thr689Ile
ENST00000699767.1:c.2066C>T ENSP00000514575.1:p.Thr689Ile
ENST00000699768.1:c.2066C>T ENSP00000514576.1:p.Thr689Ile
ENST00000699811.1:c.1661C>T ENSP00000514614.1:p.Thr554Ile
ENST00000699813.1:n.2179C>T
ENST00000699814.1:c.1689C>T
ENST00000699815.1:c.*1597C>T ENSP00000514616.1:n.*1597C>T
ENST00000699816.1:c.*956C>T ENSP00000514617.1:n.*956C>T
ENST00000699817.1:c.*1660C>T ENSP00000514618.1:n.*1660C>T
ENST00000699818.1:c.1661C>T ENSP00000514619.1:p.Thr554Ile
ENST00000699819.1:c.*1223C>T ENSP00000514620.1:n.*1223C>T
ENST00000699820.1:c.*4C>T ENSP00000514621.1:n.*4C>T
ENST00000699821.1:c.1661C>T ENSP00000514622.1:p.Thr554Ile
ENST00000699822.1:c.*1518C>T ENSP00000514623.1:n.*1518C>T
ENST00000699823.1:c.1661C>T ENSP00000514624.1:p.Thr554Ile
ENST00000699824.1:c.*1569C>T ENSP00000514625.1:n.*1569C>T
ENST00000699825.1:c.1505C>T ENSP00000514626.1:p.Thr502Ile
ENST00000699826.1:c.*1465C>T ENSP00000514627.1:n.*1465C>T
ENST00000699827.1:c.1898C>T ENSP00000514628.1:p.Thr633Ile
ENST00000699828.1:c.*1156C>T ENSP00000514629.1:n.*1156C>T
ENST00000699833.1:n.3838C>T
ENST00000699837.1:c.1661C>T ENSP00000514635.1:p.Thr554Ile
ENST00000699838.1:c.*1966C>T ENSP00000514636.1:n.*1966C>T
ENST00000699839.1:c.2252C>T ENSP00000514637.1:p.Thr751Ile
ENST00000699916.1:c.*1323C>T ENSP00000514684.1:n.*1323C>T
ENST00000699917.1:c.*1515C>T ENSP00000514685.1:n.*1515C>T
ENST00000699918.1:c.*1567C>T ENSP00000514686.1:n.*1567C>T
ENST00000699919.1:c.*1653C>T ENSP00000514687.1:n.*1653C>T
ENST00000699920.1:c.*1702C>T ENSP00000514688.1:n.*1702C>T
ENST00000699928.1:c.*4C>T ENSP00000514693.1:n.*4C>T
ENST00000699951.1:c.*1162C>T ENSP00000514706.1:n.*1162C>T
ENST00000699952.1:c.804-9390C>T ENSP00000514707.1:n.804-9390C>T
ENST00000265849.12:c.2066C>T MANE Select ENSP00000265849.7:p.Thr689Ile
ENST00000642292.1:c.1661C>T ENSP00000495524.1:p.Thr554Ile
ENST00000642456.1:c.1661C>T ENSP00000493814.1:p.Thr554Ile
ENST00000643595.1:c.*1465C>T ENSP00000494497.1:n.*1465C>T
ENST00000644110.1:c.1748C>T ENSP00000496392.1:p.Thr583Ile
ENST00000265849.11:c.2066C>T ENSP00000265849.7:p.Thr689Ile
ENST00000382321.5:c.863C>T ENSP00000371758.4:p.Thr288Ile
ENST00000406569.7:n.1678+4155C>T
ENST00000441476.6:c.1748C>T ENSP00000392843.2:p.Thr583Ile
ENST00000469652.1:n.63-27C>T
NM_000535.5:c.2066C>T , LRG_161t1:c.2066C>T NP_000526.1:p.Thr689Ile
NR_003085.2:n.2148C>T
XM_006715742.2:c.2060C>T XP_006715805.1:p.Thr687Ile
XM_006715744.2:c.1133C>T XP_006715807.1:p.Thr378Ile
XM_011515427.1:c.2111C>T XP_011513729.1:p.Thr704Ile
XM_011515428.1:c.1955C>T XP_011513730.1:p.Thr652Ile
XM_011515429.1:c.1748C>T XP_011513731.1:p.Thr583Ile
XM_011515430.1:c.1748C>T XP_011513732.1:p.Thr583Ile
NM_000535.6:c.2066C>T NP_000526.2:p.Thr689Ile
NM_001322003.1:c.1661C>T NP_001308932.1:p.Thr554Ile
NM_001322004.1:c.1661C>T NP_001308933.1:p.Thr554Ile
NM_001322005.1:c.1661C>T NP_001308934.1:p.Thr554Ile
NM_001322006.1:c.1910C>T NP_001308935.1:p.Thr637Ile
NM_001322007.1:c.1748C>T NP_001308936.1:p.Thr583Ile
NM_001322008.1:c.1748C>T NP_001308937.1:p.Thr583Ile
NM_001322009.1:c.1661C>T NP_001308938.1:p.Thr554Ile
NM_001322010.1:c.1505C>T NP_001308939.1:p.Thr502Ile
NM_001322011.1:c.1133C>T NP_001308940.1:p.Thr378Ile
NM_001322012.1:c.1133C>T NP_001308941.1:p.Thr378Ile
NM_001322013.1:c.1493C>T NP_001308942.1:p.Thr498Ile
NM_001322014.1:c.2066C>T NP_001308943.1:p.Thr689Ile
NM_001322015.1:c.1757C>T NP_001308944.1:p.Thr586Ile
NR_136154.1:n.2153C>T
XM_006715744.4:c.1133C>T XP_006715807.1:p.Thr378Ile
XM_017012342.2:c.1133C>T XP_016867831.1:p.Thr378Ile
XM_024446800.1:c.1505C>T XP_024302568.1:p.Thr502Ile
NM_000535.7:c.2066C>T MANE Select NP_000526.2:p.Thr689Ile
NM_001322003.2:c.1661C>T NP_001308932.1:p.Thr554Ile
NM_001322004.2:c.1661C>T NP_001308933.1:p.Thr554Ile
NM_001322005.2:c.1661C>T NP_001308934.1:p.Thr554Ile
NM_001322006.2:c.1910C>T NP_001308935.1:p.Thr637Ile
NM_001322008.2:c.1748C>T NP_001308937.1:p.Thr583Ile
NM_001322009.2:c.1661C>T NP_001308938.1:p.Thr554Ile
NM_001322010.2:c.1505C>T NP_001308939.1:p.Thr502Ile
NM_001322011.2:c.1133C>T NP_001308940.1:p.Thr378Ile
NM_001322012.2:c.1133C>T NP_001308941.1:p.Thr378Ile
NM_001322013.2:c.1493C>T NP_001308942.1:p.Thr498Ile
NM_001322014.2:c.2066C>T NP_001308943.1:p.Thr689Ile
NM_001322015.2:c.1757C>T NP_001308944.1:p.Thr586Ile
NM_001322007.2:c.1748C>T NP_001308936.1:p.Thr583Ile