Canonical Allele Identifier: CA350189

Gene: MSH2

Linked Data

• ClinVar Variation Id: 219446
• ClinVar RCV Id: RCV000206123 ; RCV000519579 ; RCV000562458 ; RCV001201177 ; RCV003997560
• dbSNP Id: rs864622093
• gnomAD v2: 2-47702302-T-C
• gnomAD v3: 2-47475163-T-C
• gnomAD v4: 2-47475163-T-C
• MyVariant Identifiers: chr2:g.47702302T>C (hg19) ; chr2:g.47475163T>C (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.47475163T>C , CM000664.2:g.47475163T>C	GRCh38
NC_000002.11:g.47702302T>C , CM000664.1:g.47702302T>C	GRCh37
NC_000002.10:g.47555806T>C	NCBI36
NG_007110.2:g.77040T>C , LRG_218:g.77040T>C

Transcript Alleles

HGVS	Amino-acid Change
ENST00000644900.2:c.1898T>C	ENSP00000495641.2:p.Ile633Thr
ENST00000233146.7:c.1898T>C MANE Select	ENSP00000233146.2:p.Ile633Thr
ENST00000543555.6:c.1700T>C	ENSP00000442697.1:p.Ile567Thr
ENST00000644092.1:c.*198T>C	ENSP00000496351.1:n.*198T>C
ENST00000645339.1:c.1898T>C	ENSP00000496441.1:p.Ile633Thr
ENST00000645506.1:c.1898T>C	ENSP00000495455.1:p.Ile633Thr
ENST00000646415.1:c.1898T>C	ENSP00000495543.1:p.Ile633Thr
ENST00000233146.6:c.1898T>C	ENSP00000233146.2:p.Ile633Thr
ENST00000406134.5:c.1898T>C	ENSP00000384199.1:p.Ile633Thr
ENST00000543555.5:c.1700T>C	ENSP00000442697.1:p.Ile567Thr
ENST00000610696.4:c.*294T>C	ENSP00000483159.1:n.*294T>C
ENST00000613514.4:c.*438T>C	ENSP00000484137.1:n.*438T>C
ENST00000617333.3:c.*664T>C	ENSP00000482468.1:n.*664T>C
ENST00000617938.4:c.*870T>C	ENSP00000481158.1:n.*870T>C
ENST00000621359.2:c.1898T>C	ENSP00000481416.1:p.Ile633Thr
NM_000251.2:c.1898T>C , LRG_218t1:c.1898T>C	NP_000242.1:p.Ile633Thr
NM_001258281.1:c.1700T>C	NP_001245210.1:p.Ile567Thr
XM_005264332.2:c.1898T>C	XP_005264389.2:p.Ile633Thr
XM_011532867.1:c.1898T>C	XP_011531169.1:p.Ile633Thr
XR_939685.1:n.1970T>C
XM_005264332.4:c.1898T>C	XP_005264389.2:p.Ile633Thr
XM_011532867.2:c.1898T>C	XP_011531169.1:p.Ile633Thr
XR_001738747.2:n.1960T>C
XR_939685.2:n.1960T>C
NM_000251.3:c.1898T>C MANE Select	NP_000242.1:p.Ile633Thr