Canonical Allele Identifier: CA340176339

Gene: POMGNT1 TSPAN1

Linked Data

• COSMIC: COSM4627285 ; COSM4627286
• MyVariant Identifiers: chr1:g.46658203G>A (hg19) ; chr1:g.46192531G>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000001.11:g.46192531G>A , CM000663.2:g.46192531G>A	GRCh38
NC_000001.10:g.46658203G>A , CM000663.1:g.46658203G>A	GRCh37
NC_000001.9:g.46430790G>A	NCBI36
NG_009205.2:g.32775C>T
NG_009205.3:g.32775C>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000396420.8:c.1271C>T (POMGNT1)	ENSP00000379698.4:p.Ala424Val
ENST00000477114.2:n.1833C>T (POMGNT1)
ENST00000497439.6:n.1443C>T (POMGNT1)
ENST00000684817.1:n.1631C>T (POMGNT1)
ENST00000684898.1:n.1833C>T (POMGNT1)
ENST00000685230.1:c.*581C>T (POMGNT1)	ENSP00000510305.1:n.*581C>T
ENST00000685275.1:n.1818C>T (POMGNT1)
ENST00000685444.1:c.1172C>T (POMGNT1)	ENSP00000510762.1:p.Ala391Val
ENST00000685704.1:n.1833C>T (POMGNT1)
ENST00000685775.1:n.2798C>T (POMGNT1)
ENST00000685833.1:n.2149C>T (POMGNT1)
ENST00000686252.1:n.2345C>T (POMGNT1)
ENST00000686379.1:c.*395C>T (POMGNT1)	ENSP00000508913.1:n.*395C>T
ENST00000686724.1:n.1443C>T (POMGNT1)
ENST00000686737.1:c.1271C>T (POMGNT1)	ENSP00000508736.1:p.Ala424Val
ENST00000687112.1:n.2137C>T (POMGNT1)
ENST00000687149.1:c.1271C>T (POMGNT1)	ENSP00000509745.1:p.Ala424Val
ENST00000687197.1:c.*211C>T (POMGNT1)	ENSP00000510749.1:n.*211C>T
ENST00000687235.1:n.1833C>T (POMGNT1)
ENST00000687613.1:n.2021C>T (POMGNT1)
ENST00000687683.1:c.1271C>T (POMGNT1)	ENSP00000508522.1:p.Ala424Val
ENST00000688032.1:n.1833C>T (POMGNT1)
ENST00000688596.1:n.1922C>T (POMGNT1)
ENST00000688608.1:c.1172C>T (POMGNT1)	ENSP00000508890.1:p.Ala391Val
ENST00000688919.1:n.2467C>T (POMGNT1)
ENST00000689031.1:n.1833C>T (POMGNT1)
ENST00000689717.1:n.1443C>T (POMGNT1)
ENST00000689756.1:c.*903C>T (POMGNT1)	ENSP00000509023.1:n.*903C>T
ENST00000690377.1:n.1618C>T (POMGNT1)
ENST00000690678.1:c.1271C>T (POMGNT1)	ENSP00000508703.1:p.Ala424Val
ENST00000691209.1:c.*211C>T (POMGNT1)	ENSP00000510112.1:n.*211C>T
ENST00000691243.1:c.1271C>T (POMGNT1)	ENSP00000510654.1:p.Ala424Val
ENST00000692169.1:n.1420C>T (POMGNT1)
ENST00000692202.1:n.1846C>T (POMGNT1)
ENST00000692322.1:c.*1123C>T (POMGNT1)	ENSP00000509017.1:n.*1123C>T
ENST00000692369.1:c.1271C>T (POMGNT1)	ENSP00000508453.1:p.Ala424Val
ENST00000692599.1:n.1833C>T (POMGNT1)
ENST00000692635.1:c.*211C>T (POMGNT1)	ENSP00000508425.1:n.*211C>T
ENST00000693168.1:n.1532C>T (POMGNT1)
ENST00000693218.1:c.1271C>T (POMGNT1)	ENSP00000510577.1:p.Ala424Val
ENST00000693223.1:n.2219C>T (POMGNT1)
ENST00000693365.1:n.3905C>T (POMGNT1)
ENST00000371984.8:c.1271C>T (POMGNT1) MANE Select	ENSP00000361052.3:p.Ala424Val
ENST00000371984.7:c.1271C>T (POMGNT1)	ENSP00000361052.3:p.Ala424Val
ENST00000371992.1:c.1271C>T (POMGNT1)	ENSP00000361060.1:p.Ala424Val
ENST00000396420.7:c.*940C>T (POMGNT1)	ENSP00000379698.3:n.*940C>T
ENST00000485714.1:n.657C>T (POMGNT1)
NM_001243766.1:c.1271C>T (POMGNT1)	NP_001230695.1:p.Ala424Val
NM_001290129.1:c.1205C>T (POMGNT1)	NP_001277058.1:p.Ala402Val
NM_001290130.1:c.842C>T (POMGNT1)	NP_001277059.1:p.Ala281Val
NM_017739.3:c.1271C>T (POMGNT1)	NP_060209.3:p.Ala424Val
XM_005271010.1:c.1271C>T (POMGNT1)	XP_005271067.1:p.Ala424Val
XM_006710755.1:c.1271C>T (POMGNT1)	XP_006710818.1:p.Ala424Val
XM_006710756.1:c.1271C>T (POMGNT1)	XP_006710819.1:p.Ala424Val
XM_011540460.1:c.679-3671G>A (TSPAN1)	XP_011538762.1:n.679-3671G>A
XM_011540461.1:c.634-3671G>A (TSPAN1)	XP_011538763.1:n.634-3671G>A
XM_011541759.1:c.1205C>T (POMGNT1)	XP_011540061.1:p.Ala402Val
XM_011541760.1:c.1205C>T (POMGNT1)	XP_011540062.1:p.Ala402Val
XM_011541761.1:c.179C>T (POMGNT1)	XP_011540063.1:p.Ala60Val
XR_946706.1:n.1431C>T (POMGNT1)
XM_011540460.3:c.679-3671G>A (TSPAN1)	XP_011538762.1:n.679-3671G>A
XM_011541760.3:c.1205C>T (POMGNT1)	XP_011540062.1:p.Ala402Val
XM_017001690.1:c.1271C>T (POMGNT1)	XP_016857179.1:p.Ala424Val
NM_001243766.2:c.1271C>T (POMGNT1)	NP_001230695.2:p.Ala424Val
NM_001290129.2:c.1205C>T (POMGNT1)	NP_001277058.2:p.Ala402Val
NM_001290130.2:c.842C>T (POMGNT1)	NP_001277059.2:p.Ala281Val
NM_017739.4:c.1271C>T (POMGNT1) MANE Select	NP_060209.4:p.Ala424Val