Canonical Allele Identifier: CA340171848

Gene: POMGNT1 TSPAN1

Linked Data

• gnomAD v4: 1-46190516-G-T
• MyVariant Identifiers: chr1:g.46656188G>T (hg19) ; chr1:g.46190516G>T (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000001.11:g.46190516G>T , CM000663.2:g.46190516G>T	GRCh38
NC_000001.10:g.46656188G>T , CM000663.1:g.46656188G>T	GRCh37
NC_000001.9:g.46428775G>T	NCBI36
NG_009205.2:g.34790C>A
NG_009205.3:g.34790C>A

Transcript Alleles

HGVS	Amino-acid Change
ENST00000396420.8:c.1606C>A (POMGNT1)	ENSP00000379698.4:p.Leu536Met
ENST00000477114.2:n.2168C>A (POMGNT1)
ENST00000497439.6:n.1778C>A (POMGNT1)
ENST00000684817.1:n.1966C>A (POMGNT1)
ENST00000684898.1:n.2168C>A (POMGNT1)
ENST00000685230.1:c.*916C>A (POMGNT1)	ENSP00000510305.1:n.*916C>A
ENST00000685275.1:n.2153C>A (POMGNT1)
ENST00000685444.1:c.1507C>A (POMGNT1)	ENSP00000510762.1:p.Leu503Met
ENST00000685704.1:n.2272C>A (POMGNT1)
ENST00000685775.1:n.4648C>A (POMGNT1)
ENST00000685833.1:n.3999C>A (POMGNT1)
ENST00000686252.1:n.2680C>A (POMGNT1)
ENST00000686379.1:c.*730C>A (POMGNT1)	ENSP00000508913.1:n.*730C>A
ENST00000686724.1:n.3293C>A (POMGNT1)
ENST00000686737.1:c.1606C>A (POMGNT1)	ENSP00000508736.1:p.Leu536Met
ENST00000687112.1:n.2472C>A (POMGNT1)
ENST00000687149.1:c.1645C>A (POMGNT1)	ENSP00000509745.1:p.Leu549Met
ENST00000687197.1:c.*546C>A (POMGNT1)	ENSP00000510749.1:n.*546C>A
ENST00000687235.1:n.3683C>A (POMGNT1)
ENST00000687613.1:n.2290-527C>A (POMGNT1)
ENST00000687683.1:c.1606C>A (POMGNT1)	ENSP00000508522.1:p.Leu536Met
ENST00000688032.1:n.2143C>A (POMGNT1)
ENST00000688596.1:n.2257C>A (POMGNT1)
ENST00000688608.1:c.1507C>A (POMGNT1)	ENSP00000508890.1:p.Leu503Met
ENST00000688919.1:n.3004C>A (POMGNT1)
ENST00000689031.1:n.2102-527C>A (POMGNT1)
ENST00000689717.1:n.1980C>A (POMGNT1)
ENST00000689756.1:c.*1238C>A (POMGNT1)	ENSP00000509023.1:n.*1238C>A
ENST00000690377.1:n.1953C>A (POMGNT1)
ENST00000690678.1:c.1606C>A (POMGNT1)	ENSP00000508703.1:p.Leu536Met
ENST00000691209.1:c.*546C>A (POMGNT1)	ENSP00000510112.1:n.*546C>A
ENST00000691243.1:c.1581C>A (POMGNT1)	ENSP00000510654.1:p.Val527=
ENST00000692169.1:n.3270C>A (POMGNT1)
ENST00000692202.1:n.2181C>A (POMGNT1)
ENST00000692322.1:c.*1393C>A (POMGNT1)	ENSP00000509017.1:n.*1393C>A
ENST00000692369.1:c.1606C>A (POMGNT1)	ENSP00000508453.1:p.Leu536Met
ENST00000692599.1:n.3481C>A (POMGNT1)
ENST00000692635.1:c.*481C>A (POMGNT1)	ENSP00000508425.1:n.*481C>A
ENST00000693168.1:n.3382C>A (POMGNT1)
ENST00000693218.1:c.*167C>A (POMGNT1)	ENSP00000510577.1:n.*167C>A
ENST00000693223.1:n.2554C>A (POMGNT1)
ENST00000693365.1:n.5755C>A (POMGNT1)
ENST00000371984.8:c.1606C>A (POMGNT1) MANE Select	ENSP00000361052.3:p.Leu536Met
ENST00000371984.7:c.1606C>A (POMGNT1)	ENSP00000361052.3:p.Leu536Met
ENST00000371992.1:c.1606C>A (POMGNT1)	ENSP00000361060.1:p.Leu536Met
ENST00000396420.7:c.*1275C>A (POMGNT1)	ENSP00000379698.3:n.*1275C>A
ENST00000480972.1:n.255C>A (POMGNT1)
ENST00000485714.1:n.2507C>A (POMGNT1)
NM_001243766.1:c.1606C>A (POMGNT1)	NP_001230695.1:p.Leu536Met
NM_001290129.1:c.1540C>A (POMGNT1)	NP_001277058.1:p.Leu514Met
NM_001290130.1:c.1177C>A (POMGNT1)	NP_001277059.1:p.Leu393Met
NM_017739.3:c.1606C>A (POMGNT1)	NP_060209.3:p.Leu536Met
XM_005271010.1:c.1606C>A (POMGNT1)	XP_005271067.1:p.Leu536Met
XM_006710755.1:c.1606C>A (POMGNT1)	XP_006710818.1:p.Leu536Met
XM_006710756.1:c.1606C>A (POMGNT1)	XP_006710819.1:p.Leu536Met
XM_011540460.1:c.678+5208G>T (TSPAN1)	XP_011538762.1:n.678+5208G>T
XM_011540461.1:c.633+5208G>T (TSPAN1)	XP_011538763.1:n.633+5208G>T
XM_011541759.1:c.1540C>A (POMGNT1)	XP_011540061.1:p.Leu514Met
XM_011541760.1:c.1540C>A (POMGNT1)	XP_011540062.1:p.Leu514Met
XM_011541761.1:c.514C>A (POMGNT1)	XP_011540063.1:p.Leu172Met
XM_011540460.3:c.678+5208G>T (TSPAN1)	XP_011538762.1:n.678+5208G>T
XM_011541760.3:c.1540C>A (POMGNT1)	XP_011540062.1:p.Leu514Met
XM_017001690.1:c.1606C>A (POMGNT1)	XP_016857179.1:p.Leu536Met
NM_001243766.2:c.1606C>A (POMGNT1)	NP_001230695.2:p.Leu536Met
NM_001290129.2:c.1540C>A (POMGNT1)	NP_001277058.2:p.Leu514Met
NM_001290130.2:c.1177C>A (POMGNT1)	NP_001277059.2:p.Leu393Met
NM_017739.4:c.1606C>A (POMGNT1) MANE Select	NP_060209.4:p.Leu536Met