Canonical Allele Identifier: CA303149

Gene: SCN1A

Linked Data

• ClinVar Variation Id: 189867
• ClinVar RCV Id: RCV000180820 ; RCV000256008
• dbSNP Id: rs794726716
• MyVariant Identifiers: chr2:g.166894356C>T (hg19) ; chr2:g.166037846C>T (hg38)
• PubMed: PMID:23934111 ; PMID:26096185

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.166037846C>T , CM000664.2:g.166037846C>T	GRCh38
NC_000002.11:g.166894356C>T , CM000664.1:g.166894356C>T	GRCh37
NC_000002.10:g.166602602C>T	NCBI36
NG_011906.1:g.40794G>A , LRG_8:g.40794G>A

Transcript Alleles

HGVS	Amino-acid Change
ENST00000689288.1:c.*912G>A	ENSP00000509637.1:n.*912G>A
ENST00000303395.9:c.2876G>A	ENSP00000303540.4:p.Cys959Tyr
ENST00000635750.1:c.2843G>A	ENSP00000490799.1:p.Cys948Tyr
ENST00000635776.1:c.2843G>A	ENSP00000490692.1:p.Cys948Tyr
ENST00000636194.1:c.*369G>A	ENSP00000490288.1:n.*369G>A
ENST00000636759.1:c.*2666G>A	ENSP00000490895.1:n.*2666G>A
ENST00000637968.1:n.3128G>A
ENST00000637988.1:c.2843G>A	ENSP00000490780.1:p.Cys948Tyr
ENST00000640036.1:c.2843G>A	ENSP00000491573.1:p.Cys948Tyr
ENST00000641575.1:c.2840G>A	ENSP00000492917.1:p.Cys947Tyr
ENST00000641603.1:c.2876G>A	ENSP00000492945.1:p.Cys959Tyr
ENST00000641996.1:c.*2430G>A	ENSP00000493054.1:n.*2430G>A
ENST00000671940.1:c.*819G>A	ENSP00000500336.1:n.*819G>A
ENST00000673490.1:n.5349G>A
ENST00000674923.1:c.2876G>A MANE Select	ENSP00000501589.1:p.Cys959Tyr
ENST00000303395.8:c.2876G>A	ENSP00000303540.4:p.Cys959Tyr
ENST00000375405.7:c.2843G>A	ENSP00000364554.3:p.Cys948Tyr
ENST00000409050.1:c.2792G>A	ENSP00000386312.1:p.Cys931Tyr
ENST00000423058.6:c.2876G>A	ENSP00000407030.2:p.Cys959Tyr
NM_001165963.1:c.2876G>A	NP_001159435.1:p.Cys959Tyr
NM_001165964.1:c.2792G>A	NP_001159436.1:p.Cys931Tyr
NM_001202435.1:c.2876G>A	NP_001189364.1:p.Cys959Tyr
NM_006920.4:c.2843G>A , LRG_8t1:c.2843G>A	NP_008851.3:p.Cys948Tyr
XM_011511598.1:c.2876G>A	XP_011509900.1:p.Cys959Tyr
XM_011511599.1:c.2876G>A	XP_011509901.1:p.Cys959Tyr
XM_011511600.1:c.2876G>A	XP_011509902.1:p.Cys959Tyr
XM_011511601.1:c.2876G>A	XP_011509903.1:p.Cys959Tyr
XM_011511602.1:c.2876G>A	XP_011509904.1:p.Cys959Tyr
XM_011511603.1:c.2873G>A	XP_011509905.1:p.Cys958Tyr
XM_011511604.1:c.2843G>A	XP_011509906.1:p.Cys948Tyr
XM_011511605.1:c.2840G>A	XP_011509907.1:p.Cys947Tyr
XM_011511606.1:c.2792G>A	XP_011509908.1:p.Cys931Tyr
XM_011511607.1:c.2876G>A	XP_011509909.1:p.Cys959Tyr
XR_922981.1:n.3060G>A
NM_001165963.2:c.2876G>A	NP_001159435.1:p.Cys959Tyr
NM_001165964.2:c.2792G>A	NP_001159436.1:p.Cys931Tyr
NM_001202435.2:c.2876G>A	NP_001189364.1:p.Cys959Tyr
NM_001353948.1:c.2876G>A	NP_001340877.1:p.Cys959Tyr
NM_001353949.1:c.2843G>A	NP_001340878.1:p.Cys948Tyr
NM_001353950.1:c.2843G>A	NP_001340879.1:p.Cys948Tyr
NM_001353951.1:c.2843G>A	NP_001340880.1:p.Cys948Tyr
NM_001353952.1:c.2843G>A	NP_001340881.1:p.Cys948Tyr
NM_001353954.1:c.2840G>A	NP_001340883.1:p.Cys947Tyr
NM_001353955.1:c.2840G>A	NP_001340884.1:p.Cys947Tyr
NM_001353957.1:c.2792G>A	NP_001340886.1:p.Cys931Tyr
NM_001353958.1:c.2792G>A	NP_001340887.1:p.Cys931Tyr
NM_001353960.1:c.2789G>A	NP_001340889.1:p.Cys930Tyr
NM_001353961.1:c.434G>A	NP_001340890.1:p.Cys145Tyr
NM_006920.5:c.2843G>A	NP_008851.3:p.Cys948Tyr
NR_148667.1:n.3248G>A
XR_001738883.1:n.3262G>A
XR_001738884.1:n.3234G>A
NM_001165963.3:c.2876G>A	NP_001159435.1:p.Cys959Tyr
NM_001165964.3:c.2792G>A	NP_001159436.1:p.Cys931Tyr
NM_001202435.3:c.2876G>A	NP_001189364.1:p.Cys959Tyr
NM_001353948.2:c.2876G>A	NP_001340877.1:p.Cys959Tyr
NM_001353949.2:c.2843G>A	NP_001340878.1:p.Cys948Tyr
NM_001353950.2:c.2843G>A	NP_001340879.1:p.Cys948Tyr
NM_001353951.2:c.2843G>A	NP_001340880.1:p.Cys948Tyr
NM_001353952.2:c.2843G>A	NP_001340881.1:p.Cys948Tyr
NM_001353954.2:c.2840G>A	NP_001340883.1:p.Cys947Tyr
NM_001353955.2:c.2840G>A	NP_001340884.1:p.Cys947Tyr
NM_001353957.2:c.2792G>A	NP_001340886.1:p.Cys931Tyr
NM_001353958.2:c.2792G>A	NP_001340887.1:p.Cys931Tyr
NM_001353960.2:c.2789G>A	NP_001340889.1:p.Cys930Tyr
NM_001353961.2:c.434G>A	NP_001340890.1:p.Cys145Tyr
NM_006920.6:c.2843G>A	NP_008851.3:p.Cys948Tyr
NR_148667.2:n.3229G>A
NM_001165963.4:c.2876G>A MANE Select	NP_001159435.1:p.Cys959Tyr