Canonical Allele Identifier: CA263701

Gene: CLN3

Linked Data

• ClinVar Variation Id: 56279
• ClinVar RCV Id: RCV000049691 ; RCV001853043
• dbSNP Id: rs386833728
• MyVariant Identifiers: chr16:g.28497898C>G (hg19) ; chr16:g.28486577C>G (hg38)
• PubMed: PMID:21990111

Genomic Alleles

HGVS	Genome Assembly
NC_000016.10:g.28486577C>G , CM000678.2:g.28486577C>G	GRCh38
NC_000016.9:g.28497898C>G , CM000678.1:g.28497898C>G	GRCh37
NC_000016.8:g.28405399C>G	NCBI36
NG_008654.2:g.10726G>C , LRG_689:g.10726G>C

Transcript Alleles

HGVS	Amino-acid Change
ENST00000333496.14:c.461+1G>C	ENSP00000329171.9:n.461+1G>C
ENST00000355477.10:c.533+1G>C	ENSP00000347660.7:n.533+1G>C
ENST00000357857.14:c.371+1G>C	ENSP00000350523.9:n.371+1G>C
ENST00000359984.12:c.533+1G>C	ENSP00000353073.9:n.533+1G>C
ENST00000360019.8:c.461+1G>C	ENSP00000353116.3:n.461+1G>C
ENST00000395653.9:c.218+879G>C	ENSP00000379014.5:n.218+879G>C
ENST00000561505.2:c.*57+1G>C	ENSP00000457615.2:n.*57+1G>C
ENST00000561689.6:n.818+1G>C
ENST00000565316.6:c.533+1G>C	ENSP00000456117.1:n.533+1G>C
ENST00000565778.6:c.308+879G>C	ENSP00000458015.1:n.308+879G>C
ENST00000566083.6:n.991+1G>C
ENST00000566824.6:n.513+1G>C
ENST00000567495.6:c.461-87G>C	ENSP00000456013.2:n.461-87G>C
ENST00000567963.6:c.371+1G>C	ENSP00000455387.2:n.371+1G>C
ENST00000568076.6:n.660+1G>C
ENST00000568422.6:c.460+879G>C	ENSP00000455549.2:n.460+879G>C
ENST00000568452.6:n.636+1G>C
ENST00000568472.6:n.553+879G>C
ENST00000568497.6:c.-292-2459G>C	ENSP00000456414.2:n.-292-2459G>C
ENST00000568558.6:c.380+879G>C	ENSP00000455603.2:n.380+879G>C
ENST00000569430.7:c.533+1G>C	ENSP00000454229.1:n.533+1G>C
ENST00000628023.3:c.223-2459G>C	ENSP00000486178.1:n.223-2459G>C
ENST00000635861.1:c.*57+1G>C	ENSP00000490034.1:n.*57+1G>C
ENST00000635887.1:c.533+1G>C	ENSP00000490709.1:n.533+1G>C
ENST00000635958.1:n.644+1G>C
ENST00000635973.1:c.284+1G>C	ENSP00000490363.1:n.284+1G>C
ENST00000636017.1:c.*57+1G>C	ENSP00000490538.1:n.*57+1G>C
ENST00000636078.1:n.575+1G>C
ENST00000636147.2:c.533+1G>C MANE Select	ENSP00000490105.1:n.533+1G>C
ENST00000636172.1:c.*57+1G>C	ENSP00000490505.1:n.*57+1G>C
ENST00000636228.1:c.371+1G>C	ENSP00000489627.1:n.371+1G>C
ENST00000636351.1:n.253+1G>C
ENST00000636503.1:c.533+1G>C	ENSP00000489824.1:n.533+1G>C
ENST00000636766.1:c.533+1G>C	ENSP00000489841.1:n.533+1G>C
ENST00000636839.1:n.685+1G>C
ENST00000636853.1:n.1414+1G>C
ENST00000636866.1:c.533+1G>C	ENSP00000490880.1:n.533+1G>C
ENST00000636977.1:n.1601+1G>C
ENST00000637100.1:c.533+1G>C	ENSP00000490394.1:n.533+1G>C
ENST00000637107.1:c.*57+1G>C	ENSP00000490248.1:n.*57+1G>C
ENST00000637184.1:c.533+1G>C	ENSP00000489952.1:n.533+1G>C
ENST00000637299.1:c.*342+1G>C	ENSP00000489823.1:n.*342+1G>C
ENST00000637376.1:c.533+1G>C	ENSP00000490758.1:n.533+1G>C
ENST00000637578.1:c.*57+1G>C	ENSP00000490206.1:n.*57+1G>C
ENST00000637699.1:c.460+879G>C	ENSP00000490049.1:n.460+879G>C
ENST00000637871.1:c.*57+1G>C	ENSP00000490670.1:n.*57+1G>C
ENST00000637985.1:c.*472+1G>C	ENSP00000490932.1:n.*472+1G>C
ENST00000333496.13:c.461+1G>C	ENSP00000329171.9:n.461+1G>C
ENST00000355477.9:c.460+879G>C	ENSP00000347660.6:n.460+879G>C
ENST00000357806.11:c.380+879G>C	ENSP00000350457.7:n.380+879G>C
ENST00000357857.13:c.371+1G>C	ENSP00000350523.9:n.371+1G>C
ENST00000359984.11:c.371+1G>C	ENSP00000353073.8:n.371+1G>C
ENST00000360019.6:c.533+1G>C	ENSP00000353116.2:n.533+1G>C
ENST00000395653.8:c.233+1G>C	ENSP00000379014.4:n.233+1G>C
ENST00000561505.1:c.233+1G>C	ENSP00000457615.1:n.233+1G>C
ENST00000561689.5:n.374+1G>C
ENST00000563874.5:n.1887+1G>C
ENST00000564574.5:n.581+1G>C
ENST00000565047.1:n.271+879G>C
ENST00000565140.5:c.460+879G>C	ENSP00000455342.1:n.460+879G>C
ENST00000565316.5:c.533+1G>C	ENSP00000456117.1:n.533+1G>C
ENST00000565688.5:c.284+1G>C	ENSP00000456122.1:n.284+1G>C
ENST00000565778.5:c.308+879G>C	ENSP00000458015.1:n.308+879G>C
ENST00000566057.5:c.291+879G>C	ENSP00000456693.1:n.291+879G>C
ENST00000566083.5:n.764+1G>C
ENST00000566824.5:n.582+1G>C
ENST00000567495.5:c.460+879G>C	ENSP00000456013.1:n.460+879G>C
ENST00000567963.5:c.533+1G>C	ENSP00000455387.1:n.533+1G>C
ENST00000568076.5:n.460+879G>C
ENST00000568224.4:c.299+1G>C	ENSP00000454253.1:n.299+1G>C
ENST00000568422.5:c.313+1G>C	ENSP00000455549.1:n.313+1G>C
ENST00000568452.5:n.533+1G>C
ENST00000568472.5:n.158-2459G>C
ENST00000568497.5:c.223-2459G>C	ENSP00000456414.1:n.223-2459G>C
ENST00000568558.5:c.218+879G>C	ENSP00000455603.1:n.218+879G>C
ENST00000569030.5:c.460+879G>C	ENSP00000454680.1:n.460+879G>C
ENST00000569430.5:c.533+1G>C	ENSP00000454229.1:n.533+1G>C
ENST00000628023.2:c.223-2459G>C	ENSP00000486178.1:n.223-2459G>C
ENST00000631023.2:c.533+1G>C	ENSP00000486616.1:n.533+1G>C
NM_000086.2:c.533+1G>C , LRG_689t1:c.533+1G>C	NP_000077.1:n.533+1G>C
NM_001042432.1:c.533+1G>C , LRG_689t2:c.533+1G>C	NP_001035897.1:n.533+1G>C
NM_001286104.1:c.461+1G>C	NP_001273033.1:n.461+1G>C
NM_001286105.1:c.233+1G>C	NP_001273034.1:n.233+1G>C
NM_001286109.1:c.299+1G>C	NP_001273038.1:n.299+1G>C
NM_001286110.1:c.371+1G>C	NP_001273039.1:n.371+1G>C
NM_001042432.2:c.533+1G>C MANE Select	NP_001035897.1:n.533+1G>C
NM_001286104.2:c.461+1G>C	NP_001273033.1:n.461+1G>C
NM_001286105.2:c.233+1G>C	NP_001273034.1:n.233+1G>C
NM_001286109.2:c.299+1G>C	NP_001273038.1:n.299+1G>C
NM_001286110.2:c.371+1G>C	NP_001273039.1:n.371+1G>C