Canonical Allele Identifier: CA16605116

Gene: PMS2

Linked Data

• ClinVar Variation Id: 392296
• ClinVar RCV Id: RCV000428147 ; RCV000535164 ; RCV002429459 ; RCV003449097
• dbSNP Id: rs1057524433
• MyVariant Identifiers: chr7:g.6022489G>A (hg19) ; chr7:g.5982858G>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5982858G>A , CM000669.2:g.5982858G>A	GRCh38
NC_000007.13:g.6022489G>A , CM000669.1:g.6022489G>A	GRCh37
NC_000007.12:g.5989015G>A	NCBI36
NG_008466.1:g.31249C>T , LRG_161:g.31249C>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000699814.2:c.*1536C>T	ENSP00000514615.2:n.*1536C>T
ENST00000699840.2:c.2137C>T	ENSP00000514638.2:p.Gln713Ter
ENST00000699930.2:c.2032C>T	ENSP00000514695.2:p.Gln678Ter
ENST00000406569.8:c.1678+4229C>T	ENSP00000514464.1:n.1678+4229C>T
ENST00000644110.2:c.*1734C>T	ENSP00000496392.2:n.*1734C>T
ENST00000699752.1:c.1984C>T	ENSP00000514561.1:p.Gln662Ter
ENST00000699753.1:c.*1561C>T	ENSP00000514562.1:n.*1561C>T
ENST00000699754.1:c.1942C>T	ENSP00000514563.1:p.Gln648Ter
ENST00000699755.1:c.*1539C>T	ENSP00000514564.1:n.*1539C>T
ENST00000699756.1:c.*1727C>T	ENSP00000514565.1:n.*1727C>T
ENST00000699757.1:c.*1397C>T	ENSP00000514566.1:n.*1397C>T
ENST00000699758.1:c.*1397C>T	ENSP00000514567.1:n.*1397C>T
ENST00000699759.1:n.2994C>T
ENST00000699760.1:c.1822C>T	ENSP00000514568.1:p.Gln608Ter
ENST00000699761.1:c.1735C>T	ENSP00000514569.1:p.Gln579Ter
ENST00000699762.1:c.1567C>T	ENSP00000514570.1:p.Gln523Ter
ENST00000699763.1:c.*1230C>T	ENSP00000514571.1:n.*1230C>T
ENST00000699764.1:c.*458C>T	ENSP00000514572.1:n.*458C>T
ENST00000699765.1:c.*1236C>T	ENSP00000514573.1:n.*1236C>T
ENST00000699766.1:c.2140C>T	ENSP00000514574.1:p.Gln714Ter
ENST00000699767.1:c.2140C>T	ENSP00000514575.1:p.Gln714Ter
ENST00000699768.1:c.2140C>T	ENSP00000514576.1:p.Gln714Ter
ENST00000699811.1:c.1735C>T	ENSP00000514614.1:p.Gln579Ter
ENST00000699813.1:n.2253C>T
ENST00000699814.1:c.1763C>T
ENST00000699815.1:c.*1671C>T	ENSP00000514616.1:n.*1671C>T
ENST00000699816.1:c.*1030C>T	ENSP00000514617.1:n.*1030C>T
ENST00000699817.1:c.*1734C>T	ENSP00000514618.1:n.*1734C>T
ENST00000699818.1:c.1735C>T	ENSP00000514619.1:p.Gln579Ter
ENST00000699819.1:c.*1297C>T	ENSP00000514620.1:n.*1297C>T
ENST00000699820.1:c.*78C>T	ENSP00000514621.1:n.*78C>T
ENST00000699821.1:c.1735C>T	ENSP00000514622.1:p.Gln579Ter
ENST00000699822.1:c.*1592C>T	ENSP00000514623.1:n.*1592C>T
ENST00000699823.1:c.1735C>T	ENSP00000514624.1:p.Gln579Ter
ENST00000699824.1:c.*1643C>T	ENSP00000514625.1:n.*1643C>T
ENST00000699825.1:c.1579C>T	ENSP00000514626.1:p.Gln527Ter
ENST00000699826.1:c.*1539C>T	ENSP00000514627.1:n.*1539C>T
ENST00000699827.1:c.1972C>T	ENSP00000514628.1:p.Gln658Ter
ENST00000699828.1:c.*1230C>T	ENSP00000514629.1:n.*1230C>T
ENST00000699833.1:n.3912C>T
ENST00000699837.1:c.1735C>T	ENSP00000514635.1:p.Gln579Ter
ENST00000699838.1:c.*2040C>T	ENSP00000514636.1:n.*2040C>T
ENST00000699839.1:c.2326C>T	ENSP00000514637.1:p.Gln776Ter
ENST00000699916.1:c.*1397C>T	ENSP00000514684.1:n.*1397C>T
ENST00000699917.1:c.*1589C>T	ENSP00000514685.1:n.*1589C>T
ENST00000699918.1:c.*1641C>T	ENSP00000514686.1:n.*1641C>T
ENST00000699919.1:c.*1727C>T	ENSP00000514687.1:n.*1727C>T
ENST00000699920.1:c.*1776C>T	ENSP00000514688.1:n.*1776C>T
ENST00000699928.1:c.*78C>T	ENSP00000514693.1:n.*78C>T
ENST00000699951.1:c.*1236C>T	ENSP00000514706.1:n.*1236C>T
ENST00000699952.1:c.804-9316C>T	ENSP00000514707.1:n.804-9316C>T
ENST00000265849.12:c.2140C>T MANE Select	ENSP00000265849.7:p.Gln714Ter
ENST00000642292.1:c.1735C>T	ENSP00000495524.1:p.Gln579Ter
ENST00000642456.1:c.1735C>T	ENSP00000493814.1:p.Gln579Ter
ENST00000643595.1:c.*1539C>T	ENSP00000494497.1:n.*1539C>T
ENST00000644110.1:c.1822C>T	ENSP00000496392.1:p.Gln608Ter
ENST00000265849.11:c.2140C>T	ENSP00000265849.7:p.Gln714Ter
ENST00000382321.5:c.937C>T	ENSP00000371758.4:p.Gln313Ter
ENST00000406569.7:n.1678+4229C>T
ENST00000441476.6:c.1822C>T	ENSP00000392843.2:p.Gln608Ter
NM_000535.5:c.2140C>T , LRG_161t1:c.2140C>T	NP_000526.1:p.Gln714Ter
NR_003085.2:n.2222C>T
XM_006715742.2:c.2134C>T	XP_006715805.1:p.Gln712Ter
XM_006715744.2:c.1207C>T	XP_006715807.1:p.Gln403Ter
XM_011515427.1:c.2185C>T	XP_011513729.1:p.Gln729Ter
XM_011515428.1:c.2029C>T	XP_011513730.1:p.Gln677Ter
XM_011515429.1:c.1822C>T	XP_011513731.1:p.Gln608Ter
XM_011515430.1:c.1822C>T	XP_011513732.1:p.Gln608Ter
NM_000535.6:c.2140C>T	NP_000526.2:p.Gln714Ter
NM_001322003.1:c.1735C>T	NP_001308932.1:p.Gln579Ter
NM_001322004.1:c.1735C>T	NP_001308933.1:p.Gln579Ter
NM_001322005.1:c.1735C>T	NP_001308934.1:p.Gln579Ter
NM_001322006.1:c.1984C>T	NP_001308935.1:p.Gln662Ter
NM_001322007.1:c.1822C>T	NP_001308936.1:p.Gln608Ter
NM_001322008.1:c.1822C>T	NP_001308937.1:p.Gln608Ter
NM_001322009.1:c.1735C>T	NP_001308938.1:p.Gln579Ter
NM_001322010.1:c.1579C>T	NP_001308939.1:p.Gln527Ter
NM_001322011.1:c.1207C>T	NP_001308940.1:p.Gln403Ter
NM_001322012.1:c.1207C>T	NP_001308941.1:p.Gln403Ter
NM_001322013.1:c.1567C>T	NP_001308942.1:p.Gln523Ter
NM_001322014.1:c.2140C>T	NP_001308943.1:p.Gln714Ter
NM_001322015.1:c.1831C>T	NP_001308944.1:p.Gln611Ter
NR_136154.1:n.2227C>T
XM_006715744.4:c.1207C>T	XP_006715807.1:p.Gln403Ter
XM_017012342.2:c.1207C>T	XP_016867831.1:p.Gln403Ter
XM_024446800.1:c.1579C>T	XP_024302568.1:p.Gln527Ter
NM_000535.7:c.2140C>T MANE Select	NP_000526.2:p.Gln714Ter
NM_001322003.2:c.1735C>T	NP_001308932.1:p.Gln579Ter
NM_001322004.2:c.1735C>T	NP_001308933.1:p.Gln579Ter
NM_001322005.2:c.1735C>T	NP_001308934.1:p.Gln579Ter
NM_001322006.2:c.1984C>T	NP_001308935.1:p.Gln662Ter
NM_001322008.2:c.1822C>T	NP_001308937.1:p.Gln608Ter
NM_001322009.2:c.1735C>T	NP_001308938.1:p.Gln579Ter
NM_001322010.2:c.1579C>T	NP_001308939.1:p.Gln527Ter
NM_001322011.2:c.1207C>T	NP_001308940.1:p.Gln403Ter
NM_001322012.2:c.1207C>T	NP_001308941.1:p.Gln403Ter
NM_001322013.2:c.1567C>T	NP_001308942.1:p.Gln523Ter
NM_001322014.2:c.2140C>T	NP_001308943.1:p.Gln714Ter
NM_001322015.2:c.1831C>T	NP_001308944.1:p.Gln611Ter
NM_001322007.2:c.1822C>T	NP_001308936.1:p.Gln608Ter