Canonical Allele Identifier: CA155139
Gene: SCN9A HGNC NCBI
SCN1A-AS1 HGNC NCBI

Linked Data

ClinVar Variation Id: 130272
dbSNP Id: rs199550149

Genomic Alleles

HGVS Genome Assembly
NC_000002.12:g.166199716A>G , CM000664.2:g.166199716A>G GRCh38
NC_000002.11:g.167056226A>G , CM000664.1:g.167056226A>G GRCh37
NC_000002.10:g.166764472A>G NCBI36
NG_012798.1:g.181272T>C , LRG_369:g.181272T>C

Transcript Alleles

HGVS Amino-acid Change
ENST00000303354.11:c.4923T>C (SCN9A) ENSP00000304748.7:p.Leu1641=
ENST00000409435.6:c.4923T>C (SCN9A) ENSP00000386330.2:p.Leu1641=
ENST00000642356.2:c.4923T>C (SCN9A) MANE Select ENSP00000495601.1:p.Leu1641=
ENST00000644316.1:c.4767T>C (SCN9A) ENSP00000493939.1:p.Leu1589=
ENST00000645907.1:c.4890T>C (SCN9A) ENSP00000495983.1:p.Leu1630=
ENST00000646694.1:n.1300T>C (SCN9A)
ENST00000303354.10:c.4923T>C (SCN9A) ENSP00000304748.7:p.Leu1641=
ENST00000409435.5:c.4923T>C (SCN9A) ENSP00000386330.1:p.Leu1641=
ENST00000409672.5:c.4890T>C (SCN9A) ENSP00000386306.1:p.Leu1630=
NM_002977.3:c.4890T>C , LRG_369t1:c.4890T>C (SCN9A) NP_002968.1:p.Leu1630=
NR_110260.1:n.509A>G (SCN1A-AS1)
XM_005246757.1:c.4923T>C (SCN9A) XP_005246814.1:p.Leu1641=
XM_011511616.1:c.4923T>C (SCN9A) XP_011509918.1:p.Leu1641=
XM_011511617.1:c.4923T>C (SCN9A) XP_011509919.1:p.Leu1641=
XM_011511618.1:c.4890T>C (SCN9A) XP_011509920.1:p.Leu1630=
NM_001365536.1:c.4923T>C (SCN9A) MANE Select NP_001352465.1:p.Leu1641=
XM_011511616.3:c.4923T>C (SCN9A) XP_011509918.1:p.Leu1641=
XM_011511617.2:c.4923T>C (SCN9A) XP_011509919.1:p.Leu1641=
XM_011511618.2:c.4890T>C (SCN9A) XP_011509920.1:p.Leu1630=
XM_017004668.1:c.4536T>C (SCN9A) XP_016860157.1:p.Leu1512=
XM_017004669.1:c.4179T>C (SCN9A) XP_016860158.1:p.Leu1393=