Canonical Allele Identifier: CA116348
Gene: CLN3 HGNC NCBI

Linked Data

ClinVar Variation Id: 3557
dbSNP Id: rs267606737

Genomic Alleles

HGVS Genome Assembly
NC_000016.10:g.28486427G>T , CM000678.2:g.28486427G>T GRCh38
NC_000016.9:g.28497748G>T , CM000678.1:g.28497748G>T GRCh37
NC_000016.8:g.28405249G>T NCBI36
NG_008654.2:g.10876C>A , LRG_689:g.10876C>A

Transcript Alleles

HGVS Amino-acid Change
ENST00000333496.14:c.525C>A ENSP00000329171.9:p.Tyr175Ter
ENST00000355477.10:c.533+151C>A ENSP00000347660.7:n.533+151C>A
ENST00000357857.14:c.435C>A ENSP00000350523.9:p.Tyr145Ter
ENST00000359984.12:c.597C>A ENSP00000353073.9:p.Tyr199Ter
ENST00000360019.8:c.525C>A ENSP00000353116.3:p.Tyr175Ter
ENST00000395653.9:c.218+1029C>A ENSP00000379014.5:n.218+1029C>A
ENST00000561505.2:c.*121C>A ENSP00000457615.2:n.*121C>A
ENST00000561689.6:n.882C>A
ENST00000565316.6:c.597C>A ENSP00000456117.1:p.Tyr199Ter
ENST00000565778.6:c.308+1029C>A ENSP00000458015.1:n.308+1029C>A
ENST00000566083.6:n.1055C>A
ENST00000566824.6:n.577C>A
ENST00000567495.6:c.*56C>A ENSP00000456013.2:n.*56C>A
ENST00000567963.6:c.435C>A ENSP00000455387.2:p.Tyr145Ter
ENST00000568076.6:n.724C>A
ENST00000568422.6:c.460+1029C>A ENSP00000455549.2:n.460+1029C>A
ENST00000568452.6:n.700C>A
ENST00000568472.6:n.553+1029C>A
ENST00000568497.6:c.-292-2309C>A ENSP00000456414.2:n.-292-2309C>A
ENST00000568558.6:c.380+1029C>A ENSP00000455603.2:n.380+1029C>A
ENST00000569430.7:c.597C>A ENSP00000454229.1:p.Tyr199Ter
ENST00000628023.3:c.223-2309C>A ENSP00000486178.1:n.223-2309C>A
ENST00000635861.1:c.*121C>A ENSP00000490034.1:n.*121C>A
ENST00000635887.1:c.597C>A ENSP00000490709.1:p.Tyr199Ter
ENST00000635958.1:n.708C>A
ENST00000635973.1:c.348C>A ENSP00000490363.1:p.Tyr116Ter
ENST00000636017.1:c.*121C>A ENSP00000490538.1:n.*121C>A
ENST00000636078.1:n.639C>A
ENST00000636147.2:c.597C>A MANE Select ENSP00000490105.1:p.Tyr199Ter
ENST00000636172.1:c.*121C>A ENSP00000490505.1:n.*121C>A
ENST00000636228.1:c.371+151C>A ENSP00000489627.1:n.371+151C>A
ENST00000636351.1:n.317C>A
ENST00000636503.1:c.597C>A ENSP00000489824.1:p.Tyr199Ter
ENST00000636766.1:c.597C>A ENSP00000489841.1:p.Tyr199Ter
ENST00000636839.1:n.749C>A
ENST00000636853.1:n.1512C>A
ENST00000636866.1:c.597C>A ENSP00000490880.1:p.Tyr199Ter
ENST00000636977.1:n.1665C>A
ENST00000637100.1:c.597C>A ENSP00000490394.1:p.Tyr199Ter
ENST00000637107.1:c.*121C>A ENSP00000490248.1:n.*121C>A
ENST00000637184.1:c.597C>A ENSP00000489952.1:p.Tyr199Ter
ENST00000637299.1:c.*406C>A ENSP00000489823.1:n.*406C>A
ENST00000637376.1:c.597C>A ENSP00000490758.1:p.Tyr199Ter
ENST00000637578.1:c.*121C>A ENSP00000490206.1:n.*121C>A
ENST00000637699.1:c.460+1029C>A ENSP00000490049.1:n.460+1029C>A
ENST00000637871.1:c.*121C>A ENSP00000490670.1:n.*121C>A
ENST00000637985.1:c.*536C>A ENSP00000490932.1:n.*536C>A
ENST00000333496.13:c.525C>A ENSP00000329171.9:p.Tyr175Ter
ENST00000355477.9:c.460+1029C>A ENSP00000347660.6:n.460+1029C>A
ENST00000357806.11:c.380+1029C>A ENSP00000350457.7:n.380+1029C>A
ENST00000357857.13:c.435C>A ENSP00000350523.9:p.Tyr145Ter
ENST00000359984.11:c.371+151C>A ENSP00000353073.8:n.371+151C>A
ENST00000360019.6:c.597C>A ENSP00000353116.2:p.Tyr199Ter
ENST00000395653.8:c.297C>A ENSP00000379014.4:p.Tyr99Ter
ENST00000561505.1:c.297C>A ENSP00000457615.1:p.Tyr99Ter
ENST00000561689.5:n.438C>A
ENST00000563874.5:n.1951C>A
ENST00000564574.5:n.645C>A
ENST00000565047.1:n.271+1029C>A
ENST00000565140.5:c.460+1029C>A ENSP00000455342.1:n.460+1029C>A
ENST00000565316.5:c.597C>A ENSP00000456117.1:p.Tyr199Ter
ENST00000565688.5:c.348C>A ENSP00000456122.1:p.Tyr116Ter
ENST00000565778.5:c.308+1029C>A ENSP00000458015.1:n.308+1029C>A
ENST00000566057.5:c.291+1029C>A ENSP00000456693.1:n.291+1029C>A
ENST00000566083.5:n.828C>A
ENST00000566824.5:n.646C>A
ENST00000567495.5:c.460+1029C>A ENSP00000456013.1:n.460+1029C>A
ENST00000567963.5:c.597C>A ENSP00000455387.1:p.Tyr199Ter
ENST00000568076.5:n.460+1029C>A
ENST00000568224.4:c.363C>A ENSP00000454253.1:p.Tyr121Ter
ENST00000568422.5:c.313+151C>A ENSP00000455549.1:n.313+151C>A
ENST00000568452.5:n.597C>A
ENST00000568472.5:n.158-2309C>A
ENST00000568497.5:c.223-2309C>A ENSP00000456414.1:n.223-2309C>A
ENST00000568558.5:c.218+1029C>A ENSP00000455603.1:n.218+1029C>A
ENST00000569030.5:c.460+1029C>A ENSP00000454680.1:n.460+1029C>A
ENST00000569430.5:c.597C>A ENSP00000454229.1:p.Tyr199Ter
ENST00000628023.2:c.223-2309C>A ENSP00000486178.1:n.223-2309C>A
ENST00000631023.2:c.597C>A ENSP00000486616.1:p.Tyr199Ter
NM_000086.2:c.597C>A , LRG_689t1:c.597C>A NP_000077.1:p.Tyr199Ter
NM_001042432.1:c.597C>A , LRG_689t2:c.597C>A NP_001035897.1:p.Tyr199Ter
NM_001286104.1:c.525C>A NP_001273033.1:p.Tyr175Ter
NM_001286105.1:c.297C>A NP_001273034.1:p.Tyr99Ter
NM_001286109.1:c.363C>A NP_001273038.1:p.Tyr121Ter
NM_001286110.1:c.435C>A NP_001273039.1:p.Tyr145Ter
NM_001042432.2:c.597C>A MANE Select NP_001035897.1:p.Tyr199Ter
NM_001286104.2:c.525C>A NP_001273033.1:p.Tyr175Ter
NM_001286105.2:c.297C>A NP_001273034.1:p.Tyr99Ter
NM_001286109.2:c.363C>A NP_001273038.1:p.Tyr121Ter
NM_001286110.2:c.435C>A NP_001273039.1:p.Tyr145Ter