Canonical Allele Identifier: CA045074
Gene: PMS2 HGNC NCBI

Linked Data

ClinVar Variation Id: 1046759
dbSNP Id: rs370455197
gnomAD v2: 7-6026718-A-T
gnomAD v3: 7-5987087-A-T
gnomAD v4: 7-5987087-A-T

Genomic Alleles

HGVS Genome Assembly
NC_000007.14:g.5987087A>T , CM000669.2:g.5987087A>T GRCh38
NC_000007.13:g.6026718A>T , CM000669.1:g.6026718A>T GRCh37
NC_000007.12:g.5993244A>T NCBI36
NG_008466.1:g.27020T>A , LRG_161:g.27020T>A

Transcript Alleles

HGVS Amino-acid change
ENST00000699814.2:c.*1074T>A ENSP00000514615.2:n.*1074T>A
ENST00000699840.2:c.1675T>A ENSP00000514638.2:p.Cys559Ser
ENST00000699930.2:c.1570T>A ENSP00000514695.2:p.Cys524Ser
ENST00000406569.8:c.1678T>A ENSP00000514464.1:p.Leu560Ile
ENST00000644110.2:c.*1272T>A ENSP00000496392.2:n.*1272T>A
ENST00000699752.1:c.1522T>A ENSP00000514561.1:p.Cys508Ser
ENST00000699753.1:c.*1099T>A ENSP00000514562.1:n.*1099T>A
ENST00000699754.1:c.1480T>A ENSP00000514563.1:p.Cys494Ser
ENST00000699755.1:c.*1077T>A ENSP00000514564.1:n.*1077T>A
ENST00000699756.1:c.*1265T>A ENSP00000514565.1:n.*1265T>A
ENST00000699757.1:c.*935T>A ENSP00000514566.1:n.*935T>A
ENST00000699758.1:c.*935T>A ENSP00000514567.1:n.*935T>A
ENST00000699759.1:n.2532T>A
ENST00000699760.1:c.1360T>A ENSP00000514568.1:p.Cys454Ser
ENST00000699761.1:c.1273T>A ENSP00000514569.1:p.Cys425Ser
ENST00000699762.1:c.1105T>A ENSP00000514570.1:p.Cys369Ser
ENST00000699763.1:c.*768T>A ENSP00000514571.1:n.*768T>A
ENST00000699764.1:c.1589T>A ENSP00000514572.1:p.Met530Lys
ENST00000699765.1:c.*774T>A ENSP00000514573.1:n.*774T>A
ENST00000699766.1:c.1678T>A ENSP00000514574.1:p.Cys560Ser
ENST00000699767.1:c.1678T>A ENSP00000514575.1:p.Cys560Ser
ENST00000699768.1:c.1678T>A ENSP00000514576.1:p.Cys560Ser
ENST00000699811.1:c.1273T>A ENSP00000514614.1:p.Cys425Ser
ENST00000699813.1:n.1791T>A
ENST00000699814.1:c.1301T>A
ENST00000699815.1:c.*1209T>A ENSP00000514616.1:n.*1209T>A
ENST00000699816.1:c.*568T>A ENSP00000514617.1:n.*568T>A
ENST00000699817.1:c.*1272T>A ENSP00000514618.1:n.*1272T>A
ENST00000699818.1:c.1273T>A ENSP00000514619.1:p.Cys425Ser
ENST00000699819.1:c.*835T>A ENSP00000514620.1:n.*835T>A
ENST00000699820.1:c.1144+2713T>A ENSP00000514621.1:n.1144+2713T>A
ENST00000699821.1:c.1273T>A ENSP00000514622.1:p.Cys425Ser
ENST00000699822.1:c.*1130T>A ENSP00000514623.1:n.*1130T>A
ENST00000699823.1:c.1273T>A ENSP00000514624.1:p.Cys425Ser
ENST00000699824.1:c.*1181T>A ENSP00000514625.1:n.*1181T>A
ENST00000699825.1:c.1117T>A ENSP00000514626.1:p.Cys373Ser
ENST00000699826.1:c.*1077T>A ENSP00000514627.1:n.*1077T>A
ENST00000699827.1:c.1510T>A ENSP00000514628.1:p.Cys504Ser
ENST00000699828.1:c.*768T>A ENSP00000514629.1:n.*768T>A
ENST00000699833.1:n.3450T>A
ENST00000699837.1:c.1273T>A ENSP00000514635.1:p.Cys425Ser
ENST00000699838.1:c.*1578T>A ENSP00000514636.1:n.*1578T>A
ENST00000699839.1:c.1864T>A ENSP00000514637.1:p.Cys622Ser
ENST00000699916.1:c.*935T>A ENSP00000514684.1:n.*935T>A
ENST00000699917.1:c.*1127T>A ENSP00000514685.1:n.*1127T>A
ENST00000699918.1:c.*1179T>A ENSP00000514686.1:n.*1179T>A
ENST00000699919.1:c.*1265T>A ENSP00000514687.1:n.*1265T>A
ENST00000699920.1:c.*1314T>A ENSP00000514688.1:n.*1314T>A
ENST00000699928.1:c.989-4096T>A ENSP00000514693.1:n.989-4096T>A
ENST00000699929.1:c.*979T>A ENSP00000514694.1:n.*979T>A
ENST00000699930.1:c.1570T>A ENSP00000514695.1:p.Cys524Ser
ENST00000699931.1:n.3106T>A
ENST00000699951.1:c.*774T>A ENSP00000514706.1:n.*774T>A
ENST00000699952.1:c.803+10239T>A ENSP00000514707.1:n.803+10239T>A
ENST00000699953.1:c.*785T>A ENSP00000514708.1:n.*785T>A
ENST00000699954.1:c.*979T>A ENSP00000514709.1:n.*979T>A
ENST00000265849.12:c.1678T>A MANE Select ENSP00000265849.7:p.Cys560Ser
ENST00000642292.1:c.1273T>A ENSP00000495524.1:p.Cys425Ser
ENST00000642456.1:c.1273T>A ENSP00000493814.1:p.Cys425Ser
ENST00000643595.1:c.*1077T>A ENSP00000494497.1:n.*1077T>A
ENST00000644110.1:c.1360T>A ENSP00000496392.1:p.Cys454Ser
ENST00000265849.11:c.1678T>A ENSP00000265849.7:p.Cys560Ser
ENST00000382321.5:c.804-4096T>A ENSP00000371758.4:n.804-4096T>A
ENST00000406569.7:n.1678T>A
ENST00000441476.6:c.1360T>A ENSP00000392843.2:p.Cys454Ser
ENST00000469652.1:n.63-4182T>A
NM_000535.5:c.1678T>A , LRG_161t1:c.1678T>A NP_000526.1:p.Cys560Ser
NR_003085.2:n.1760T>A
XM_006715742.2:c.1672T>A XP_006715805.1:p.Cys558Ser
XM_006715744.2:c.745T>A XP_006715807.1:p.Cys249Ser
XM_011515427.1:c.1723T>A XP_011513729.1:p.Cys575Ser
XM_011515428.1:c.1567T>A XP_011513730.1:p.Cys523Ser
XM_011515429.1:c.1360T>A XP_011513731.1:p.Cys454Ser
XM_011515430.1:c.1360T>A XP_011513732.1:p.Cys454Ser
NM_000535.6:c.1678T>A NP_000526.2:p.Cys560Ser
NM_001322003.1:c.1273T>A NP_001308932.1:p.Cys425Ser
NM_001322004.1:c.1273T>A NP_001308933.1:p.Cys425Ser
NM_001322005.1:c.1273T>A NP_001308934.1:p.Cys425Ser
NM_001322006.1:c.1522T>A NP_001308935.1:p.Cys508Ser
NM_001322007.1:c.1360T>A NP_001308936.1:p.Cys454Ser
NM_001322008.1:c.1360T>A NP_001308937.1:p.Cys454Ser
NM_001322009.1:c.1273T>A NP_001308938.1:p.Cys425Ser
NM_001322010.1:c.1117T>A NP_001308939.1:p.Cys373Ser
NM_001322011.1:c.745T>A NP_001308940.1:p.Cys249Ser
NM_001322012.1:c.745T>A NP_001308941.1:p.Cys249Ser
NM_001322013.1:c.1105T>A NP_001308942.1:p.Cys369Ser
NM_001322014.1:c.1678T>A NP_001308943.1:p.Cys560Ser
NM_001322015.1:c.1369T>A NP_001308944.1:p.Cys457Ser
NR_136154.1:n.1765T>A
XM_006715744.4:c.745T>A XP_006715807.1:p.Cys249Ser
XM_017012342.2:c.745T>A XP_016867831.1:p.Cys249Ser
XM_024446800.1:c.1117T>A XP_024302568.1:p.Cys373Ser
NM_000535.7:c.1678T>A MANE Select NP_000526.2:p.Cys560Ser
NM_001322003.2:c.1273T>A NP_001308932.1:p.Cys425Ser
NM_001322004.2:c.1273T>A NP_001308933.1:p.Cys425Ser
NM_001322005.2:c.1273T>A NP_001308934.1:p.Cys425Ser
NM_001322006.2:c.1522T>A NP_001308935.1:p.Cys508Ser
NM_001322008.2:c.1360T>A NP_001308937.1:p.Cys454Ser
NM_001322009.2:c.1273T>A NP_001308938.1:p.Cys425Ser
NM_001322010.2:c.1117T>A NP_001308939.1:p.Cys373Ser
NM_001322011.2:c.745T>A NP_001308940.1:p.Cys249Ser
NM_001322012.2:c.745T>A NP_001308941.1:p.Cys249Ser
NM_001322013.2:c.1105T>A NP_001308942.1:p.Cys369Ser
NM_001322014.2:c.1678T>A NP_001308943.1:p.Cys560Ser
NM_001322015.2:c.1369T>A NP_001308944.1:p.Cys457Ser
NM_001322007.2:c.1360T>A NP_001308936.1:p.Cys454Ser