Canonical Allele Identifier: CA038939

Gene: MSH2

Linked Data

• ClinVar Variation Id: 421121
• ClinVar RCV Id: RCV000484013 ; RCV000540608 ; RCV002329151 ; RCV003464016 ; RCV004003345
• dbSNP Id: rs745771647
• ExAC: 2:47630377 A / C
• gnomAD v2: 2-47630377-A-C
• gnomAD v4: 2-47403238-A-C
• MyVariant Identifiers: chr2:g.47630377A>C (hg19) ; chr2:g.47403238A>C (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.47403238A>C , CM000664.2:g.47403238A>C	GRCh38
NC_000002.11:g.47630377A>C , CM000664.1:g.47630377A>C	GRCh37
NC_000002.10:g.47483881A>C	NCBI36
NG_007110.2:g.5115A>C , LRG_218:g.5115A>C

Transcript Alleles

HGVS	Amino-acid Change
ENST00000644900.2:c.47A>C	ENSP00000495641.2:p.Glu16Ala
ENST00000233146.7:c.47A>C MANE Select	ENSP00000233146.2:p.Glu16Ala
ENST00000543555.6:c.-31+63A>C	ENSP00000442697.1:n.-31+63A>C
ENST00000644092.1:c.47A>C	ENSP00000496351.1:p.Glu16Ala
ENST00000645339.1:c.47A>C	ENSP00000496441.1:p.Glu16Ala
ENST00000645506.1:c.47A>C	ENSP00000495455.1:p.Glu16Ala
ENST00000646415.1:c.47A>C	ENSP00000495543.1:p.Glu16Ala
ENST00000233146.6:c.47A>C	ENSP00000233146.2:p.Glu16Ala
ENST00000406134.5:c.47A>C	ENSP00000384199.1:p.Glu16Ala
ENST00000454849.5:c.-31+63A>C	ENSP00000411482.1:n.-31+63A>C
ENST00000543555.5:c.-31+63A>C	ENSP00000442697.1:n.-31+63A>C
ENST00000610696.4:c.47A>C	ENSP00000483159.1:p.Glu16Ala
ENST00000613514.4:c.47A>C	ENSP00000484137.1:p.Glu16Ala
ENST00000617333.3:c.47A>C	ENSP00000482468.1:p.Glu16Ala
ENST00000617938.4:c.47A>C	ENSP00000481158.1:p.Glu16Ala
ENST00000621359.2:c.47A>C	ENSP00000481416.1:p.Glu16Ala
NM_000251.2:c.47A>C , LRG_218t1:c.47A>C	NP_000242.1:p.Glu16Ala
NM_001258281.1:c.-31+63A>C	NP_001245210.1:n.-31+63A>C
XM_005264332.2:c.47A>C	XP_005264389.2:p.Glu16Ala
XM_011532867.1:c.47A>C	XP_011531169.1:p.Glu16Ala
XR_939685.1:n.119A>C
XM_005264332.4:c.47A>C	XP_005264389.2:p.Glu16Ala
XM_011532867.2:c.47A>C	XP_011531169.1:p.Glu16Ala
XR_001738747.2:n.109A>C
XR_939685.2:n.109A>C
NM_000251.3:c.47A>C MANE Select	NP_000242.1:p.Glu16Ala