Canonical Allele Identifier: CA019872
Gene: MSH2 HGNC NCBI

Linked Data

ClinVar Variation Id: 36572
dbSNP Id: rs63749932
gnomAD v2: 2-47703538-C-T
gnomAD v4: 2-47476399-C-T
COSMIC: COSM27628

Genomic Alleles

HGVS Genome Assembly
NC_000002.12:g.47476399C>T , CM000664.2:g.47476399C>T GRCh38
NC_000002.11:g.47703538C>T , CM000664.1:g.47703538C>T GRCh37
NC_000002.10:g.47557042C>T NCBI36
NG_007110.2:g.78276C>T , LRG_218:g.78276C>T

Transcript Alleles

HGVS Amino-acid Change
ENST00000644900.2:c.2038C>T ENSP00000495641.2:p.Arg680Ter
ENST00000233146.7:c.2038C>T MANE Select ENSP00000233146.2:p.Arg680Ter
ENST00000543555.6:c.1840C>T ENSP00000442697.1:p.Arg614Ter
ENST00000644092.1:c.*338C>T ENSP00000496351.1:n.*338C>T
ENST00000645339.1:c.2038C>T ENSP00000496441.1:p.Arg680Ter
ENST00000645506.1:c.2038C>T ENSP00000495455.1:p.Arg680Ter
ENST00000646415.1:c.2038C>T ENSP00000495543.1:p.Arg680Ter
ENST00000233146.6:c.2038C>T ENSP00000233146.2:p.Arg680Ter
ENST00000406134.5:c.2038C>T ENSP00000384199.1:p.Arg680Ter
ENST00000543555.5:c.1840C>T ENSP00000442697.1:p.Arg614Ter
ENST00000610696.4:c.*434C>T ENSP00000483159.1:n.*434C>T
ENST00000613514.4:c.*578C>T ENSP00000484137.1:n.*578C>T
ENST00000617333.3:c.*804C>T ENSP00000482468.1:n.*804C>T
ENST00000617938.4:c.*1010C>T ENSP00000481158.1:n.*1010C>T
ENST00000621359.2:c.2038C>T ENSP00000481416.1:p.Arg680Ter
NM_000251.2:c.2038C>T , LRG_218t1:c.2038C>T NP_000242.1:p.Arg680Ter
NM_001258281.1:c.1840C>T NP_001245210.1:p.Arg614Ter
XM_005264332.2:c.2038C>T XP_005264389.2:p.Arg680Ter
XM_011532867.1:c.2038C>T XP_011531169.1:p.Arg680Ter
XR_939685.1:n.2110C>T
XM_005264332.4:c.2038C>T XP_005264389.2:p.Arg680Ter
XM_011532867.2:c.2038C>T XP_011531169.1:p.Arg680Ter
XR_001738747.2:n.2100C>T
XR_939685.2:n.2100C>T
NM_000251.3:c.2038C>T MANE Select NP_000242.1:p.Arg680Ter