Canonical Allele Identifier: CA019215

Gene: MSH2

Linked Data

• ClinVar Variation Id: 186297
• ClinVar RCV Id: RCV000165870 ; RCV000204380 ; RCV000759825 ; RCV003995461
• dbSNP Id: rs786202843
• gnomAD v2: 2-47702161-C-T
• gnomAD v3: 2-47475022-C-T
• gnomAD v4: 2-47475022-C-T
• MyVariant Identifiers: chr2:g.47702161C>T (hg19) ; chr2:g.47475022C>T (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.47475022C>T , CM000664.2:g.47475022C>T	GRCh38
NC_000002.11:g.47702161C>T , CM000664.1:g.47702161C>T	GRCh37
NC_000002.10:g.47555665C>T	NCBI36
NG_007110.2:g.76899C>T , LRG_218:g.76899C>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000644900.2:c.1760-3C>T	ENSP00000495641.2:n.1760-3C>T
ENST00000233146.7:c.1760-3C>T MANE Select	ENSP00000233146.2:n.1760-3C>T
ENST00000543555.6:c.1562-3C>T	ENSP00000442697.1:n.1562-3C>T
ENST00000644092.1:c.*60-3C>T	ENSP00000496351.1:n.*60-3C>T
ENST00000645339.1:c.1760-3C>T	ENSP00000496441.1:n.1760-3C>T
ENST00000645506.1:c.1760-3C>T	ENSP00000495455.1:n.1760-3C>T
ENST00000646415.1:c.1760-3C>T	ENSP00000495543.1:n.1760-3C>T
ENST00000233146.6:c.1760-3C>T	ENSP00000233146.2:n.1760-3C>T
ENST00000406134.5:c.1760-3C>T	ENSP00000384199.1:n.1760-3C>T
ENST00000543555.5:c.1562-3C>T	ENSP00000442697.1:n.1562-3C>T
ENST00000610696.4:c.*156-3C>T	ENSP00000483159.1:n.*156-3C>T
ENST00000613514.4:c.*300-3C>T	ENSP00000484137.1:n.*300-3C>T
ENST00000617333.3:c.*526-3C>T	ENSP00000482468.1:n.*526-3C>T
ENST00000617938.4:c.*732-3C>T	ENSP00000481158.1:n.*732-3C>T
ENST00000621359.2:c.1760-3C>T	ENSP00000481416.1:n.1760-3C>T
NM_000251.2:c.1760-3C>T , LRG_218t1:c.1760-3C>T	NP_000242.1:n.1760-3C>T
NM_001258281.1:c.1562-3C>T	NP_001245210.1:n.1562-3C>T
XM_005264332.2:c.1760-3C>T	XP_005264389.2:n.1760-3C>T
XM_011532867.1:c.1760-3C>T	XP_011531169.1:n.1760-3C>T
XR_939685.1:n.1832-3C>T
XM_005264332.4:c.1760-3C>T	XP_005264389.2:n.1760-3C>T
XM_011532867.2:c.1760-3C>T	XP_011531169.1:n.1760-3C>T
XR_001738747.2:n.1822-3C>T
XR_939685.2:n.1822-3C>T
NM_000251.3:c.1760-3C>T MANE Select	NP_000242.1:n.1760-3C>T