Canonical Allele Identifier: CA017407

Gene: MSH2

Linked Data

• ClinVar Variation Id: 142842
• ClinVar RCV Id: RCV000132280 ; RCV000800194 ; RCV000780435 ; RCV001753517 ; RCV003462042 ; RCV003998140
• dbSNP Id: rs587782759
• ExAC: 2:47630446 G / C
• gnomAD v2: 2-47630446-G-C
• gnomAD v4: 2-47403307-G-C
• MyVariant Identifiers: chr2:g.47630446G>C (hg19) ; chr2:g.47403307G>C (hg38)
• PubMed: PMID:28135145

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.47403307G>C , CM000664.2:g.47403307G>C	GRCh38
NC_000002.11:g.47630446G>C , CM000664.1:g.47630446G>C	GRCh37
NC_000002.10:g.47483950G>C	NCBI36
NG_007110.2:g.5184G>C , LRG_218:g.5184G>C

Transcript Alleles

HGVS	Amino-acid Change
ENST00000644900.2:c.116G>C	ENSP00000495641.2:p.Arg39Pro
ENST00000233146.7:c.116G>C MANE Select	ENSP00000233146.2:p.Arg39Pro
ENST00000543555.6:c.-30-53G>C	ENSP00000442697.1:n.-30-53G>C
ENST00000644092.1:c.116G>C	ENSP00000496351.1:p.Arg39Pro
ENST00000645339.1:c.116G>C	ENSP00000496441.1:p.Arg39Pro
ENST00000645506.1:c.116G>C	ENSP00000495455.1:p.Arg39Pro
ENST00000646415.1:c.116G>C	ENSP00000495543.1:p.Arg39Pro
ENST00000233146.6:c.116G>C	ENSP00000233146.2:p.Arg39Pro
ENST00000406134.5:c.116G>C	ENSP00000384199.1:p.Arg39Pro
ENST00000454849.5:c.-30-53G>C	ENSP00000411482.1:n.-30-53G>C
ENST00000543555.5:c.-30-53G>C	ENSP00000442697.1:n.-30-53G>C
ENST00000610696.4:c.116G>C	ENSP00000483159.1:p.Arg39Pro
ENST00000613514.4:c.116G>C	ENSP00000484137.1:p.Arg39Pro
ENST00000617333.3:c.116G>C	ENSP00000482468.1:p.Arg39Pro
ENST00000617938.4:c.116G>C	ENSP00000481158.1:p.Arg39Pro
ENST00000621359.2:c.116G>C	ENSP00000481416.1:p.Arg39Pro
NM_000251.2:c.116G>C , LRG_218t1:c.116G>C	NP_000242.1:p.Arg39Pro
NM_001258281.1:c.-30-53G>C	NP_001245210.1:n.-30-53G>C
XM_005264332.2:c.116G>C	XP_005264389.2:p.Arg39Pro
XM_011532867.1:c.116G>C	XP_011531169.1:p.Arg39Pro
XR_939685.1:n.188G>C
XM_005264332.4:c.116G>C	XP_005264389.2:p.Arg39Pro
XM_011532867.2:c.116G>C	XP_011531169.1:p.Arg39Pro
XR_001738747.2:n.178G>C
XR_939685.2:n.178G>C
NM_000251.3:c.116G>C MANE Select	NP_000242.1:p.Arg39Pro