Canonical Allele Identifier: CA011320

Gene: MSH6

Linked Data

• ClinVar Variation Id: 142219
• ClinVar RCV Id: RCV000131214 ; RCV000199508 ; RCV000588323
• dbSNP Id: rs374748889
• ExAC: 2:48010371 G / T
• gnomAD v2: 2-48010371-G-T
• gnomAD v3: 2-47783232-G-T
• gnomAD v4: 2-47783232-G-T
• MyVariant Identifiers: chr2:g.48010371G>T (hg19) ; chr2:g.47783232G>T (hg38)
• PubMed: PMID:26888055

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.47783232G>T , CM000664.2:g.47783232G>T	GRCh38
NC_000002.11:g.48010371G>T , CM000664.1:g.48010371G>T	GRCh37
NC_000002.10:g.47863875G>T	NCBI36
NG_007111.1:g.5086G>T , LRG_219:g.5086G>T

Transcript Alleles

HGVS	Amino-acid change
ENST00000700004.2:c.-2G>T	ENSP00000514752.2:n.-2G>T
ENST00000699999.1:n.83G>T
ENST00000700000.1:c.-2G>T	ENSP00000514749.1:n.-2G>T
ENST00000700001.1:n.71G>T
ENST00000700002.1:c.-2G>T	ENSP00000514750.1:n.-2G>T
ENST00000234420.11:c.-2G>T MANE Select	ENSP00000234420.5:n.-2G>T
ENST00000540021.6:c.-2G>T	ENSP00000446475.1:n.-2G>T
ENST00000652107.1:c.-37-7695G>T	ENSP00000498629.1:n.-37-7695G>T
ENST00000673637.1:c.-38+1G>T	ENSP00000501310.1:n.-38+1G>T
ENST00000673922.1:n.88G>T
ENST00000234420.9:c.-2G>T	ENSP00000234420.4:n.-2G>T
ENST00000445503.5:c.-2G>T	ENSP00000405294.1:n.-2G>T
ENST00000456246.1:c.-2G>T	ENSP00000410570.1:n.-2G>T
ENST00000493177.1:n.63G>T
ENST00000540021.5:c.-2G>T	ENSP00000446475.1:n.-2G>T
ENST00000606499.1:c.-37-7695G>T	ENSP00000475605.1:n.-37-7695G>T
ENST00000614496.4:c.-738G>T	ENSP00000477844.1:n.-738G>T
ENST00000616033.4:c.-2G>T	ENSP00000480261.1:n.-2G>T
ENST00000622629.4:c.-3098G>T	ENSP00000482078.1:n.-3098G>T
NM_000179.2:c.-2G>T , LRG_219t1:c.-2G>T	NP_000170.1:n.-2G>T
NM_001281492.1:c.-2G>T	NP_001268421.1:n.-2G>T
NM_001281493.1:c.-738G>T	NP_001268422.1:n.-738G>T
XM_011532800.1:c.-38+1G>T	XP_011531102.1:n.-38+1G>T
XM_024452819.1:c.-2G>T	XP_024308587.1:n.-2G>T
XM_024452822.1:c.-738G>T	XP_024308590.1:n.-738G>T
NM_000179.3:c.-2G>T MANE Select	NP_000170.1:n.-2G>T
NM_001281492.2:c.-2G>T	NP_001268421.1:n.-2G>T
NM_001281493.2:c.-738G>T	NP_001268422.1:n.-738G>T