Canonical Allele Identifier: CA010907
Gene: PMS2 HGNC NCBI

Linked Data

ClinVar Variation Id: 41709
dbSNP Id: rs201671325
gnomAD v2: 7-6022480-C-T
gnomAD v3: 7-5982849-C-T
gnomAD v4: 7-5982849-C-T
COSMIC: COSM327135

Genomic Alleles

HGVS Genome Assembly
NC_000007.14:g.5982849C>T , CM000669.2:g.5982849C>T GRCh38
NC_000007.13:g.6022480C>T , CM000669.1:g.6022480C>T GRCh37
NC_000007.12:g.5989006C>T NCBI36
NG_008466.1:g.31258G>A , LRG_161:g.31258G>A

Transcript Alleles

HGVS Amino-acid Change
ENST00000699814.2:c.*1545G>A ENSP00000514615.2:n.*1545G>A
ENST00000699840.2:c.2146G>A ENSP00000514638.2:p.Val716Met
ENST00000699930.2:c.2041G>A ENSP00000514695.2:p.Val681Met
ENST00000406569.8:c.1678+4238G>A ENSP00000514464.1:n.1678+4238G>A
ENST00000644110.2:c.*1743G>A ENSP00000496392.2:n.*1743G>A
ENST00000699752.1:c.1993G>A ENSP00000514561.1:p.Val665Met
ENST00000699753.1:c.*1570G>A ENSP00000514562.1:n.*1570G>A
ENST00000699754.1:c.1951G>A ENSP00000514563.1:p.Val651Met
ENST00000699755.1:c.*1548G>A ENSP00000514564.1:n.*1548G>A
ENST00000699756.1:c.*1736G>A ENSP00000514565.1:n.*1736G>A
ENST00000699757.1:c.*1406G>A ENSP00000514566.1:n.*1406G>A
ENST00000699758.1:c.*1406G>A ENSP00000514567.1:n.*1406G>A
ENST00000699759.1:n.3003G>A
ENST00000699760.1:c.1831G>A ENSP00000514568.1:p.Val611Met
ENST00000699761.1:c.1744G>A ENSP00000514569.1:p.Val582Met
ENST00000699762.1:c.1576G>A ENSP00000514570.1:p.Val526Met
ENST00000699763.1:c.*1239G>A ENSP00000514571.1:n.*1239G>A
ENST00000699764.1:c.*467G>A ENSP00000514572.1:n.*467G>A
ENST00000699765.1:c.*1245G>A ENSP00000514573.1:n.*1245G>A
ENST00000699766.1:c.2149G>A ENSP00000514574.1:p.Val717Met
ENST00000699767.1:c.2149G>A ENSP00000514575.1:p.Val717Met
ENST00000699768.1:c.2149G>A ENSP00000514576.1:p.Val717Met
ENST00000699811.1:c.1744G>A ENSP00000514614.1:p.Val582Met
ENST00000699813.1:n.2262G>A
ENST00000699814.1:c.1772G>A
ENST00000699815.1:c.*1680G>A ENSP00000514616.1:n.*1680G>A
ENST00000699816.1:c.*1039G>A ENSP00000514617.1:n.*1039G>A
ENST00000699817.1:c.*1743G>A ENSP00000514618.1:n.*1743G>A
ENST00000699818.1:c.1744G>A ENSP00000514619.1:p.Val582Met
ENST00000699819.1:c.*1306G>A ENSP00000514620.1:n.*1306G>A
ENST00000699820.1:c.*87G>A ENSP00000514621.1:n.*87G>A
ENST00000699821.1:c.1744G>A ENSP00000514622.1:p.Val582Met
ENST00000699822.1:c.*1601G>A ENSP00000514623.1:n.*1601G>A
ENST00000699823.1:c.1744G>A ENSP00000514624.1:p.Val582Met
ENST00000699824.1:c.*1652G>A ENSP00000514625.1:n.*1652G>A
ENST00000699825.1:c.1588G>A ENSP00000514626.1:p.Val530Met
ENST00000699826.1:c.*1548G>A ENSP00000514627.1:n.*1548G>A
ENST00000699827.1:c.1981G>A ENSP00000514628.1:p.Val661Met
ENST00000699828.1:c.*1239G>A ENSP00000514629.1:n.*1239G>A
ENST00000699833.1:n.3921G>A
ENST00000699837.1:c.1744G>A ENSP00000514635.1:p.Val582Met
ENST00000699838.1:c.*2049G>A ENSP00000514636.1:n.*2049G>A
ENST00000699839.1:c.2335G>A ENSP00000514637.1:p.Val779Met
ENST00000699916.1:c.*1406G>A ENSP00000514684.1:n.*1406G>A
ENST00000699917.1:c.*1598G>A ENSP00000514685.1:n.*1598G>A
ENST00000699918.1:c.*1650G>A ENSP00000514686.1:n.*1650G>A
ENST00000699919.1:c.*1736G>A ENSP00000514687.1:n.*1736G>A
ENST00000699920.1:c.*1785G>A ENSP00000514688.1:n.*1785G>A
ENST00000699928.1:c.*87G>A ENSP00000514693.1:n.*87G>A
ENST00000699951.1:c.*1245G>A ENSP00000514706.1:n.*1245G>A
ENST00000699952.1:c.804-9307G>A ENSP00000514707.1:n.804-9307G>A
ENST00000265849.12:c.2149G>A MANE Select ENSP00000265849.7:p.Val717Met
ENST00000642292.1:c.1744G>A ENSP00000495524.1:p.Val582Met
ENST00000642456.1:c.1744G>A ENSP00000493814.1:p.Val582Met
ENST00000643595.1:c.*1548G>A ENSP00000494497.1:n.*1548G>A
ENST00000644110.1:c.1831G>A ENSP00000496392.1:p.Val611Met
ENST00000265849.11:c.2149G>A ENSP00000265849.7:p.Val717Met
ENST00000382321.5:c.946G>A ENSP00000371758.4:p.Val316Met
ENST00000406569.7:n.1678+4238G>A
ENST00000441476.6:c.1831G>A ENSP00000392843.2:p.Val611Met
NM_000535.5:c.2149G>A , LRG_161t1:c.2149G>A NP_000526.1:p.Val717Met
NR_003085.2:n.2231G>A
XM_006715742.2:c.2143G>A XP_006715805.1:p.Val715Met
XM_006715744.2:c.1216G>A XP_006715807.1:p.Val406Met
XM_011515427.1:c.2194G>A XP_011513729.1:p.Val732Met
XM_011515428.1:c.2038G>A XP_011513730.1:p.Val680Met
XM_011515429.1:c.1831G>A XP_011513731.1:p.Val611Met
XM_011515430.1:c.1831G>A XP_011513732.1:p.Val611Met
NM_000535.6:c.2149G>A NP_000526.2:p.Val717Met
NM_001322003.1:c.1744G>A NP_001308932.1:p.Val582Met
NM_001322004.1:c.1744G>A NP_001308933.1:p.Val582Met
NM_001322005.1:c.1744G>A NP_001308934.1:p.Val582Met
NM_001322006.1:c.1993G>A NP_001308935.1:p.Val665Met
NM_001322007.1:c.1831G>A NP_001308936.1:p.Val611Met
NM_001322008.1:c.1831G>A NP_001308937.1:p.Val611Met
NM_001322009.1:c.1744G>A NP_001308938.1:p.Val582Met
NM_001322010.1:c.1588G>A NP_001308939.1:p.Val530Met
NM_001322011.1:c.1216G>A NP_001308940.1:p.Val406Met
NM_001322012.1:c.1216G>A NP_001308941.1:p.Val406Met
NM_001322013.1:c.1576G>A NP_001308942.1:p.Val526Met
NM_001322014.1:c.2149G>A NP_001308943.1:p.Val717Met
NM_001322015.1:c.1840G>A NP_001308944.1:p.Val614Met
NR_136154.1:n.2236G>A
XM_006715744.4:c.1216G>A XP_006715807.1:p.Val406Met
XM_017012342.2:c.1216G>A XP_016867831.1:p.Val406Met
XM_024446800.1:c.1588G>A XP_024302568.1:p.Val530Met
NM_000535.7:c.2149G>A MANE Select NP_000526.2:p.Val717Met
NM_001322003.2:c.1744G>A NP_001308932.1:p.Val582Met
NM_001322004.2:c.1744G>A NP_001308933.1:p.Val582Met
NM_001322005.2:c.1744G>A NP_001308934.1:p.Val582Met
NM_001322006.2:c.1993G>A NP_001308935.1:p.Val665Met
NM_001322008.2:c.1831G>A NP_001308937.1:p.Val611Met
NM_001322009.2:c.1744G>A NP_001308938.1:p.Val582Met
NM_001322010.2:c.1588G>A NP_001308939.1:p.Val530Met
NM_001322011.2:c.1216G>A NP_001308940.1:p.Val406Met
NM_001322012.2:c.1216G>A NP_001308941.1:p.Val406Met
NM_001322013.2:c.1576G>A NP_001308942.1:p.Val526Met
NM_001322014.2:c.2149G>A NP_001308943.1:p.Val717Met
NM_001322015.2:c.1840G>A NP_001308944.1:p.Val614Met
NM_001322007.2:c.1831G>A NP_001308936.1:p.Val611Met