Canonical Allele Identifier: CA010772

Gene: PMS2

Linked Data

• ClinVar Variation Id: 141651
• ClinVar RCV Id: RCV000130250 ; RCV000222360 ; RCV000230692 ; RCV001251272 ; RCV001798443 ; RCV003467136
• dbSNP Id: rs587781909
• ExAC: 7:6022561 T / G
• gnomAD v2: 7-6022561-T-G
• gnomAD v3: 7-5982930-T-G
• gnomAD v4: 7-5982930-T-G
• MyVariant Identifiers: chr7:g.6022561T>G (hg19) ; chr7:g.5982930T>G (hg38)
• PubMed: PMID:27443514

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5982930T>G , CM000669.2:g.5982930T>G	GRCh38
NC_000007.13:g.6022561T>G , CM000669.1:g.6022561T>G	GRCh37
NC_000007.12:g.5989087T>G	NCBI36
NG_008466.1:g.31177A>C , LRG_161:g.31177A>C

Transcript Alleles

HGVS	Amino-acid Change
ENST00000699814.2:c.*1464A>C	ENSP00000514615.2:n.*1464A>C
ENST00000699840.2:c.2065A>C	ENSP00000514638.2:p.Lys689Gln
ENST00000699930.2:c.1960A>C	ENSP00000514695.2:p.Lys654Gln
ENST00000406569.8:c.1678+4157A>C	ENSP00000514464.1:n.1678+4157A>C
ENST00000644110.2:c.*1662A>C	ENSP00000496392.2:n.*1662A>C
ENST00000699752.1:c.1912A>C	ENSP00000514561.1:p.Lys638Gln
ENST00000699753.1:c.*1489A>C	ENSP00000514562.1:n.*1489A>C
ENST00000699754.1:c.1870A>C	ENSP00000514563.1:p.Lys624Gln
ENST00000699755.1:c.*1467A>C	ENSP00000514564.1:n.*1467A>C
ENST00000699756.1:c.*1655A>C	ENSP00000514565.1:n.*1655A>C
ENST00000699757.1:c.*1325A>C	ENSP00000514566.1:n.*1325A>C
ENST00000699758.1:c.*1325A>C	ENSP00000514567.1:n.*1325A>C
ENST00000699759.1:n.2922A>C
ENST00000699760.1:c.1750A>C	ENSP00000514568.1:p.Lys584Gln
ENST00000699761.1:c.1663A>C	ENSP00000514569.1:p.Lys555Gln
ENST00000699762.1:c.1495A>C	ENSP00000514570.1:p.Lys499Gln
ENST00000699763.1:c.*1158A>C	ENSP00000514571.1:n.*1158A>C
ENST00000699764.1:c.*386A>C	ENSP00000514572.1:n.*386A>C
ENST00000699765.1:c.*1164A>C	ENSP00000514573.1:n.*1164A>C
ENST00000699766.1:c.2068A>C	ENSP00000514574.1:p.Lys690Gln
ENST00000699767.1:c.2068A>C	ENSP00000514575.1:p.Lys690Gln
ENST00000699768.1:c.2068A>C	ENSP00000514576.1:p.Lys690Gln
ENST00000699811.1:c.1663A>C	ENSP00000514614.1:p.Lys555Gln
ENST00000699813.1:n.2181A>C
ENST00000699814.1:c.1691A>C
ENST00000699815.1:c.*1599A>C	ENSP00000514616.1:n.*1599A>C
ENST00000699816.1:c.*958A>C	ENSP00000514617.1:n.*958A>C
ENST00000699817.1:c.*1662A>C	ENSP00000514618.1:n.*1662A>C
ENST00000699818.1:c.1663A>C	ENSP00000514619.1:p.Lys555Gln
ENST00000699819.1:c.*1225A>C	ENSP00000514620.1:n.*1225A>C
ENST00000699820.1:c.*6A>C	ENSP00000514621.1:n.*6A>C
ENST00000699821.1:c.1663A>C	ENSP00000514622.1:p.Lys555Gln
ENST00000699822.1:c.*1520A>C	ENSP00000514623.1:n.*1520A>C
ENST00000699823.1:c.1663A>C	ENSP00000514624.1:p.Lys555Gln
ENST00000699824.1:c.*1571A>C	ENSP00000514625.1:n.*1571A>C
ENST00000699825.1:c.1507A>C	ENSP00000514626.1:p.Lys503Gln
ENST00000699826.1:c.*1467A>C	ENSP00000514627.1:n.*1467A>C
ENST00000699827.1:c.1900A>C	ENSP00000514628.1:p.Lys634Gln
ENST00000699828.1:c.*1158A>C	ENSP00000514629.1:n.*1158A>C
ENST00000699833.1:n.3840A>C
ENST00000699837.1:c.1663A>C	ENSP00000514635.1:p.Lys555Gln
ENST00000699838.1:c.*1968A>C	ENSP00000514636.1:n.*1968A>C
ENST00000699839.1:c.2254A>C	ENSP00000514637.1:p.Lys752Gln
ENST00000699916.1:c.*1325A>C	ENSP00000514684.1:n.*1325A>C
ENST00000699917.1:c.*1517A>C	ENSP00000514685.1:n.*1517A>C
ENST00000699918.1:c.*1569A>C	ENSP00000514686.1:n.*1569A>C
ENST00000699919.1:c.*1655A>C	ENSP00000514687.1:n.*1655A>C
ENST00000699920.1:c.*1704A>C	ENSP00000514688.1:n.*1704A>C
ENST00000699928.1:c.*6A>C	ENSP00000514693.1:n.*6A>C
ENST00000699951.1:c.*1164A>C	ENSP00000514706.1:n.*1164A>C
ENST00000699952.1:c.804-9388A>C	ENSP00000514707.1:n.804-9388A>C
ENST00000265849.12:c.2068A>C MANE Select	ENSP00000265849.7:p.Lys690Gln
ENST00000642292.1:c.1663A>C	ENSP00000495524.1:p.Lys555Gln
ENST00000642456.1:c.1663A>C	ENSP00000493814.1:p.Lys555Gln
ENST00000643595.1:c.*1467A>C	ENSP00000494497.1:n.*1467A>C
ENST00000644110.1:c.1750A>C	ENSP00000496392.1:p.Lys584Gln
ENST00000265849.11:c.2068A>C	ENSP00000265849.7:p.Lys690Gln
ENST00000382321.5:c.865A>C	ENSP00000371758.4:p.Lys289Gln
ENST00000406569.7:n.1678+4157A>C
ENST00000441476.6:c.1750A>C	ENSP00000392843.2:p.Lys584Gln
ENST00000469652.1:n.63-25A>C
NM_000535.5:c.2068A>C , LRG_161t1:c.2068A>C	NP_000526.1:p.Lys690Gln
NR_003085.2:n.2150A>C
XM_006715742.2:c.2062A>C	XP_006715805.1:p.Lys688Gln
XM_006715744.2:c.1135A>C	XP_006715807.1:p.Lys379Gln
XM_011515427.1:c.2113A>C	XP_011513729.1:p.Lys705Gln
XM_011515428.1:c.1957A>C	XP_011513730.1:p.Lys653Gln
XM_011515429.1:c.1750A>C	XP_011513731.1:p.Lys584Gln
XM_011515430.1:c.1750A>C	XP_011513732.1:p.Lys584Gln
NM_000535.6:c.2068A>C	NP_000526.2:p.Lys690Gln
NM_001322003.1:c.1663A>C	NP_001308932.1:p.Lys555Gln
NM_001322004.1:c.1663A>C	NP_001308933.1:p.Lys555Gln
NM_001322005.1:c.1663A>C	NP_001308934.1:p.Lys555Gln
NM_001322006.1:c.1912A>C	NP_001308935.1:p.Lys638Gln
NM_001322007.1:c.1750A>C	NP_001308936.1:p.Lys584Gln
NM_001322008.1:c.1750A>C	NP_001308937.1:p.Lys584Gln
NM_001322009.1:c.1663A>C	NP_001308938.1:p.Lys555Gln
NM_001322010.1:c.1507A>C	NP_001308939.1:p.Lys503Gln
NM_001322011.1:c.1135A>C	NP_001308940.1:p.Lys379Gln
NM_001322012.1:c.1135A>C	NP_001308941.1:p.Lys379Gln
NM_001322013.1:c.1495A>C	NP_001308942.1:p.Lys499Gln
NM_001322014.1:c.2068A>C	NP_001308943.1:p.Lys690Gln
NM_001322015.1:c.1759A>C	NP_001308944.1:p.Lys587Gln
NR_136154.1:n.2155A>C
XM_006715744.4:c.1135A>C	XP_006715807.1:p.Lys379Gln
XM_017012342.2:c.1135A>C	XP_016867831.1:p.Lys379Gln
XM_024446800.1:c.1507A>C	XP_024302568.1:p.Lys503Gln
NM_000535.7:c.2068A>C MANE Select	NP_000526.2:p.Lys690Gln
NM_001322003.2:c.1663A>C	NP_001308932.1:p.Lys555Gln
NM_001322004.2:c.1663A>C	NP_001308933.1:p.Lys555Gln
NM_001322005.2:c.1663A>C	NP_001308934.1:p.Lys555Gln
NM_001322006.2:c.1912A>C	NP_001308935.1:p.Lys638Gln
NM_001322008.2:c.1750A>C	NP_001308937.1:p.Lys584Gln
NM_001322009.2:c.1663A>C	NP_001308938.1:p.Lys555Gln
NM_001322010.2:c.1507A>C	NP_001308939.1:p.Lys503Gln
NM_001322011.2:c.1135A>C	NP_001308940.1:p.Lys379Gln
NM_001322012.2:c.1135A>C	NP_001308941.1:p.Lys379Gln
NM_001322013.2:c.1495A>C	NP_001308942.1:p.Lys499Gln
NM_001322014.2:c.2068A>C	NP_001308943.1:p.Lys690Gln
NM_001322015.2:c.1759A>C	NP_001308944.1:p.Lys587Gln
NM_001322007.2:c.1750A>C	NP_001308936.1:p.Lys584Gln