Canonical Allele Identifier: CA009889

Gene: PMS2

Linked Data

• ClinVar Variation Id: 186139
• ClinVar RCV Id: RCV000165677 ; RCV000227646 ; RCV000679352 ; RCV001175050 ; RCV002492663 ; RCV003462182
• dbSNP Id: rs63750686
• ExAC: 7:6026820 C / A
• gnomAD v2: 7-6026820-C-A
• gnomAD v3: 7-5987189-C-A
• gnomAD v4: 7-5987189-C-A
• MyVariant Identifiers: chr7:g.6026820C>A (hg19) ; chr7:g.5987189C>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5987189C>A , CM000669.2:g.5987189C>A	GRCh38
NC_000007.13:g.6026820C>A , CM000669.1:g.6026820C>A	GRCh37
NC_000007.12:g.5993346C>A	NCBI36
NG_008466.1:g.26918G>T , LRG_161:g.26918G>T

Transcript Alleles

HGVS	Amino-acid change
ENST00000699814.2:c.*972G>T	ENSP00000514615.2:n.*972G>T
ENST00000699840.2:c.1573G>T	ENSP00000514638.2:p.Asp525Tyr
ENST00000699930.2:c.1468G>T	ENSP00000514695.2:p.Asp490Tyr
ENST00000406569.8:c.1576G>T	ENSP00000514464.1:p.Asp526Tyr
ENST00000644110.2:c.*1170G>T	ENSP00000496392.2:n.*1170G>T
ENST00000699752.1:c.1420G>T	ENSP00000514561.1:p.Asp474Tyr
ENST00000699753.1:c.*997G>T	ENSP00000514562.1:n.*997G>T
ENST00000699754.1:c.1378G>T	ENSP00000514563.1:p.Asp460Tyr
ENST00000699755.1:c.*975G>T	ENSP00000514564.1:n.*975G>T
ENST00000699756.1:c.*1163G>T	ENSP00000514565.1:n.*1163G>T
ENST00000699757.1:c.*833G>T	ENSP00000514566.1:n.*833G>T
ENST00000699758.1:c.*833G>T	ENSP00000514567.1:n.*833G>T
ENST00000699759.1:n.2430G>T
ENST00000699760.1:c.1258G>T	ENSP00000514568.1:p.Asp420Tyr
ENST00000699761.1:c.1171G>T	ENSP00000514569.1:p.Asp391Tyr
ENST00000699762.1:c.1003G>T	ENSP00000514570.1:p.Asp335Tyr
ENST00000699763.1:c.*666G>T	ENSP00000514571.1:n.*666G>T
ENST00000699764.1:c.1553+23G>T	ENSP00000514572.1:n.1553+23G>T
ENST00000699765.1:c.*672G>T	ENSP00000514573.1:n.*672G>T
ENST00000699766.1:c.1576G>T	ENSP00000514574.1:p.Asp526Tyr
ENST00000699767.1:c.1576G>T	ENSP00000514575.1:p.Asp526Tyr
ENST00000699768.1:c.1576G>T	ENSP00000514576.1:p.Asp526Tyr
ENST00000699811.1:c.1171G>T	ENSP00000514614.1:p.Asp391Tyr
ENST00000699813.1:n.1689G>T
ENST00000699814.1:c.1199G>T
ENST00000699815.1:c.*1107G>T	ENSP00000514616.1:n.*1107G>T
ENST00000699816.1:c.*466G>T	ENSP00000514617.1:n.*466G>T
ENST00000699817.1:c.*1170G>T	ENSP00000514618.1:n.*1170G>T
ENST00000699818.1:c.1171G>T	ENSP00000514619.1:p.Asp391Tyr
ENST00000699819.1:c.*733G>T	ENSP00000514620.1:n.*733G>T
ENST00000699820.1:c.1144+2611G>T	ENSP00000514621.1:n.1144+2611G>T
ENST00000699821.1:c.1171G>T	ENSP00000514622.1:p.Asp391Tyr
ENST00000699822.1:c.*1028G>T	ENSP00000514623.1:n.*1028G>T
ENST00000699823.1:c.1171G>T	ENSP00000514624.1:p.Asp391Tyr
ENST00000699824.1:c.*1079G>T	ENSP00000514625.1:n.*1079G>T
ENST00000699825.1:c.1015G>T	ENSP00000514626.1:p.Asp339Tyr
ENST00000699826.1:c.*975G>T	ENSP00000514627.1:n.*975G>T
ENST00000699827.1:c.1408G>T	ENSP00000514628.1:p.Asp470Tyr
ENST00000699828.1:c.*666G>T	ENSP00000514629.1:n.*666G>T
ENST00000699833.1:n.3348G>T
ENST00000699837.1:c.1171G>T	ENSP00000514635.1:p.Asp391Tyr
ENST00000699838.1:c.*1476G>T	ENSP00000514636.1:n.*1476G>T
ENST00000699839.1:c.1762G>T	ENSP00000514637.1:p.Asp588Tyr
ENST00000699916.1:c.*833G>T	ENSP00000514684.1:n.*833G>T
ENST00000699917.1:c.*1025G>T	ENSP00000514685.1:n.*1025G>T
ENST00000699918.1:c.*1077G>T	ENSP00000514686.1:n.*1077G>T
ENST00000699919.1:c.*1163G>T	ENSP00000514687.1:n.*1163G>T
ENST00000699920.1:c.*1212G>T	ENSP00000514688.1:n.*1212G>T
ENST00000699928.1:c.989-4198G>T	ENSP00000514693.1:n.989-4198G>T
ENST00000699929.1:c.*877G>T	ENSP00000514694.1:n.*877G>T
ENST00000699930.1:c.1468G>T	ENSP00000514695.1:p.Asp490Tyr
ENST00000699931.1:n.3004G>T
ENST00000699951.1:c.*672G>T	ENSP00000514706.1:n.*672G>T
ENST00000699952.1:c.803+10137G>T	ENSP00000514707.1:n.803+10137G>T
ENST00000699953.1:c.*683G>T	ENSP00000514708.1:n.*683G>T
ENST00000699954.1:c.*877G>T	ENSP00000514709.1:n.*877G>T
ENST00000265849.12:c.1576G>T MANE Select	ENSP00000265849.7:p.Asp526Tyr
ENST00000642292.1:c.1171G>T	ENSP00000495524.1:p.Asp391Tyr
ENST00000642456.1:c.1171G>T	ENSP00000493814.1:p.Asp391Tyr
ENST00000643595.1:c.*975G>T	ENSP00000494497.1:n.*975G>T
ENST00000644110.1:c.1258G>T	ENSP00000496392.1:p.Asp420Tyr
ENST00000265849.11:c.1576G>T	ENSP00000265849.7:p.Asp526Tyr
ENST00000382321.5:c.804-4198G>T	ENSP00000371758.4:n.804-4198G>T
ENST00000406569.7:n.1576G>T
ENST00000441476.6:c.1258G>T	ENSP00000392843.2:p.Asp420Tyr
ENST00000469652.1:n.63-4284G>T
NM_000535.5:c.1576G>T , LRG_161t1:c.1576G>T	NP_000526.1:p.Asp526Tyr
NR_003085.2:n.1658G>T
XM_006715742.2:c.1570G>T	XP_006715805.1:p.Asp524Tyr
XM_006715744.2:c.643G>T	XP_006715807.1:p.Asp215Tyr
XM_011515427.1:c.1621G>T	XP_011513729.1:p.Asp541Tyr
XM_011515428.1:c.1465G>T	XP_011513730.1:p.Asp489Tyr
XM_011515429.1:c.1258G>T	XP_011513731.1:p.Asp420Tyr
XM_011515430.1:c.1258G>T	XP_011513732.1:p.Asp420Tyr
NM_000535.6:c.1576G>T	NP_000526.2:p.Asp526Tyr
NM_001322003.1:c.1171G>T	NP_001308932.1:p.Asp391Tyr
NM_001322004.1:c.1171G>T	NP_001308933.1:p.Asp391Tyr
NM_001322005.1:c.1171G>T	NP_001308934.1:p.Asp391Tyr
NM_001322006.1:c.1420G>T	NP_001308935.1:p.Asp474Tyr
NM_001322007.1:c.1258G>T	NP_001308936.1:p.Asp420Tyr
NM_001322008.1:c.1258G>T	NP_001308937.1:p.Asp420Tyr
NM_001322009.1:c.1171G>T	NP_001308938.1:p.Asp391Tyr
NM_001322010.1:c.1015G>T	NP_001308939.1:p.Asp339Tyr
NM_001322011.1:c.643G>T	NP_001308940.1:p.Asp215Tyr
NM_001322012.1:c.643G>T	NP_001308941.1:p.Asp215Tyr
NM_001322013.1:c.1003G>T	NP_001308942.1:p.Asp335Tyr
NM_001322014.1:c.1576G>T	NP_001308943.1:p.Asp526Tyr
NM_001322015.1:c.1267G>T	NP_001308944.1:p.Asp423Tyr
NR_136154.1:n.1663G>T
XM_006715744.4:c.643G>T	XP_006715807.1:p.Asp215Tyr
XM_017012342.2:c.643G>T	XP_016867831.1:p.Asp215Tyr
XM_024446800.1:c.1015G>T	XP_024302568.1:p.Asp339Tyr
NM_000535.7:c.1576G>T MANE Select	NP_000526.2:p.Asp526Tyr
NM_001322003.2:c.1171G>T	NP_001308932.1:p.Asp391Tyr
NM_001322004.2:c.1171G>T	NP_001308933.1:p.Asp391Tyr
NM_001322005.2:c.1171G>T	NP_001308934.1:p.Asp391Tyr
NM_001322006.2:c.1420G>T	NP_001308935.1:p.Asp474Tyr
NM_001322008.2:c.1258G>T	NP_001308937.1:p.Asp420Tyr
NM_001322009.2:c.1171G>T	NP_001308938.1:p.Asp391Tyr
NM_001322010.2:c.1015G>T	NP_001308939.1:p.Asp339Tyr
NM_001322011.2:c.643G>T	NP_001308940.1:p.Asp215Tyr
NM_001322012.2:c.643G>T	NP_001308941.1:p.Asp215Tyr
NM_001322013.2:c.1003G>T	NP_001308942.1:p.Asp335Tyr
NM_001322014.2:c.1576G>T	NP_001308943.1:p.Asp526Tyr
NM_001322015.2:c.1267G>T	NP_001308944.1:p.Asp423Tyr
NM_001322007.2:c.1258G>T	NP_001308936.1:p.Asp420Tyr