Canonical Allele Identifier: CA009330

Gene: MSH6 FBXO11

Linked Data

• ClinVar Variation Id: 89228
• ClinVar RCV Id: RCV000132230 ; RCV000221704 ; RCV000524122
• dbSNP Id: rs63751121
• ExAC: 2:48026979 A / C
• gnomAD v2: 2-48026979-A-C
• gnomAD v3: 2-47799840-A-C
• gnomAD v4: 2-47799840-A-C
• MyVariant Identifiers: chr2:g.48026979A>C (hg19) ; chr2:g.47799840A>C (hg38)
• PubMed: PMID:15483016 ; PMID:16813607

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.47799840A>C , CM000664.2:g.47799840A>C	GRCh38
NC_000002.11:g.48026979A>C , CM000664.1:g.48026979A>C	GRCh37
NC_000002.10:g.47880483A>C	NCBI36
NG_007111.1:g.21694A>C , LRG_219:g.21694A>C

Transcript Alleles

HGVS	Amino-acid change
ENST00000411819.2:c.1560A>C (MSH6)	ENSP00000406248.2:p.Glu520Asp
ENST00000420813.6:c.1560A>C (MSH6)	ENSP00000390382.2:p.Glu520Asp
ENST00000455383.6:c.1560A>C (MSH6)	ENSP00000397484.2:p.Glu520Asp
ENST00000700004.2:c.1857A>C (MSH6)	ENSP00000514752.2:p.Glu619Asp
ENST00000699999.1:n.1941A>C (MSH6)
ENST00000700000.1:c.1606+251A>C (MSH6)	ENSP00000514749.1:n.1606+251A>C
ENST00000700002.1:c.1863A>C (MSH6)	ENSP00000514750.1:p.Glu621Asp
ENST00000700003.1:c.628-3580A>C (MSH6)	ENSP00000514751.1:n.628-3580A>C
ENST00000700004.1:c.1014A>C (MSH6)	ENSP00000514752.1:p.Glu338Asp
ENST00000234420.11:c.1857A>C (MSH6) MANE Select	ENSP00000234420.5:p.Glu619Asp
ENST00000540021.6:c.1467A>C (MSH6)	ENSP00000446475.1:p.Glu489Asp
ENST00000652107.1:c.1560A>C (MSH6)	ENSP00000498629.1:p.Glu520Asp
ENST00000673637.1:c.1560A>C (MSH6)	ENSP00000501310.1:p.Glu520Asp
ENST00000234420.9:c.1857A>C (MSH6)	ENSP00000234420.4:p.Glu619Asp
ENST00000405808.5:c.169+8355T>G (FBXO11)	ENSP00000385127.1:n.169+8355T>G
ENST00000434234.5:c.*124+8154T>G (FBXO11)	ENSP00000402692.1:n.*124+8154T>G
ENST00000445503.5:c.*1204A>C (MSH6)	ENSP00000405294.1:n.*1204A>C
ENST00000538136.1:c.951A>C (MSH6)	ENSP00000438580.1:p.Glu317Asp
ENST00000540021.5:c.1467A>C (MSH6)	ENSP00000446475.1:p.Glu489Asp
ENST00000614496.4:c.951A>C (MSH6)	ENSP00000477844.1:p.Glu317Asp
ENST00000616033.4:c.1854A>C (MSH6)	ENSP00000480261.1:p.Glu618Asp
ENST00000622629.4:c.-1240A>C (MSH6)	ENSP00000482078.1:n.-1240A>C
NM_000179.2:c.1857A>C , LRG_219t1:c.1857A>C (MSH6)	NP_000170.1:p.Glu619Asp
NM_001281492.1:c.1467A>C (MSH6)	NP_001268421.1:p.Glu489Asp
NM_001281493.1:c.951A>C (MSH6)	NP_001268422.1:p.Glu317Asp
NM_001281494.1:c.951A>C (MSH6)	NP_001268423.1:p.Glu317Asp
XM_005264271.1:c.1560A>C (MSH6)	XP_005264328.1:p.Glu520Asp
XM_011532798.1:c.1674A>C (MSH6)	XP_011531100.1:p.Glu558Asp
XM_011532799.1:c.1560A>C (MSH6)	XP_011531101.1:p.Glu520Asp
XM_011532800.1:c.1560A>C (MSH6)	XP_011531102.1:p.Glu520Asp
XM_024452819.1:c.1857A>C (MSH6)	XP_024308587.1:p.Glu619Asp
XM_024452820.1:c.1674A>C (MSH6)	XP_024308588.1:p.Glu558Asp
XM_024452821.1:c.1560A>C (MSH6)	XP_024308589.1:p.Glu520Asp
XM_024452822.1:c.951A>C (MSH6)	XP_024308590.1:p.Glu317Asp
NM_000179.3:c.1857A>C (MSH6) MANE Select	NP_000170.1:p.Glu619Asp
NM_001281492.2:c.1467A>C (MSH6)	NP_001268421.1:p.Glu489Asp
NM_001281493.2:c.951A>C (MSH6)	NP_001268422.1:p.Glu317Asp
NM_001281494.2:c.951A>C (MSH6)	NP_001268423.1:p.Glu317Asp