Canonical Allele Identifier: CA009239

Gene: PMS2

Linked Data

• ClinVar Variation Id: 91291
• ClinVar RCV Id: RCV000009822 ; RCV000076796
• dbSNP Id: rs267608158
• MyVariant Identifiers: chr7:g.6029429A>T (hg19) ; chr7:g.5989798A>T (hg38)
• PubMed: PMID:16472587

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5989798A>T , CM000669.2:g.5989798A>T	GRCh38
NC_000007.13:g.6029429A>T , CM000669.1:g.6029429A>T	GRCh37
NC_000007.12:g.5995955A>T	NCBI36
NG_008466.1:g.24309T>A , LRG_161:g.24309T>A

Transcript Alleles

HGVS	Amino-acid Change
ENST00000699814.2:c.*540+2T>A	ENSP00000514615.2:n.*540+2T>A
ENST00000699840.2:c.1141+2T>A	ENSP00000514638.2:n.1141+2T>A
ENST00000699930.2:c.1036+2T>A	ENSP00000514695.2:n.1036+2T>A
ENST00000406569.8:c.1144+2T>A	ENSP00000514464.1:n.1144+2T>A
ENST00000644110.2:c.*738+2T>A	ENSP00000496392.2:n.*738+2T>A
ENST00000699752.1:c.988+2175T>A	ENSP00000514561.1:n.988+2175T>A
ENST00000699753.1:c.*565+2T>A	ENSP00000514562.1:n.*565+2T>A
ENST00000699754.1:c.946+2T>A	ENSP00000514563.1:n.946+2T>A
ENST00000699755.1:c.*543+2T>A	ENSP00000514564.1:n.*543+2T>A
ENST00000699756.1:c.*731+2T>A	ENSP00000514565.1:n.*731+2T>A
ENST00000699757.1:c.*401+2T>A	ENSP00000514566.1:n.*401+2T>A
ENST00000699758.1:c.*401+2T>A	ENSP00000514567.1:n.*401+2T>A
ENST00000699759.1:n.1998+2T>A
ENST00000699760.1:c.826+2T>A	ENSP00000514568.1:n.826+2T>A
ENST00000699761.1:c.739+2T>A	ENSP00000514569.1:n.739+2T>A
ENST00000699762.1:c.571+2T>A	ENSP00000514570.1:n.571+2T>A
ENST00000699763.1:c.*234+2T>A	ENSP00000514571.1:n.*234+2T>A
ENST00000699764.1:c.1144+2T>A	ENSP00000514572.1:n.1144+2T>A
ENST00000699765.1:c.*240+2T>A	ENSP00000514573.1:n.*240+2T>A
ENST00000699766.1:c.1144+2T>A	ENSP00000514574.1:n.1144+2T>A
ENST00000699767.1:c.1144+2T>A	ENSP00000514575.1:n.1144+2T>A
ENST00000699768.1:c.1144+2T>A	ENSP00000514576.1:n.1144+2T>A
ENST00000699811.1:c.739+2T>A	ENSP00000514614.1:n.739+2T>A
ENST00000699813.1:n.1257+2T>A
ENST00000699814.1:c.767+2T>A
ENST00000699815.1:c.*636+2T>A	ENSP00000514616.1:n.*636+2T>A
ENST00000699816.1:c.739+2T>A	ENSP00000514617.1:n.739+2T>A
ENST00000699817.1:c.*738+2T>A	ENSP00000514618.1:n.*738+2T>A
ENST00000699818.1:c.739+2T>A	ENSP00000514619.1:n.739+2T>A
ENST00000699819.1:c.*301+2T>A	ENSP00000514620.1:n.*301+2T>A
ENST00000699820.1:c.1144+2T>A	ENSP00000514621.1:n.1144+2T>A
ENST00000699821.1:c.739+2T>A	ENSP00000514622.1:n.739+2T>A
ENST00000699822.1:c.*596+2T>A	ENSP00000514623.1:n.*596+2T>A
ENST00000699823.1:c.739+2T>A	ENSP00000514624.1:n.739+2T>A
ENST00000699824.1:c.*647+2T>A	ENSP00000514625.1:n.*647+2T>A
ENST00000699825.1:c.583+2175T>A	ENSP00000514626.1:n.583+2175T>A
ENST00000699826.1:c.*543+2T>A	ENSP00000514627.1:n.*543+2T>A
ENST00000699827.1:c.976+2T>A	ENSP00000514628.1:n.976+2T>A
ENST00000699828.1:c.*234+2T>A	ENSP00000514629.1:n.*234+2T>A
ENST00000699829.1:c.*645+2T>A	ENSP00000514630.1:n.*645+2T>A
ENST00000699830.1:c.*543+2T>A	ENSP00000514631.1:n.*543+2T>A
ENST00000699833.1:n.2916+2T>A
ENST00000699837.1:c.739+2T>A	ENSP00000514635.1:n.739+2T>A
ENST00000699838.1:c.*1044+2T>A	ENSP00000514636.1:n.*1044+2T>A
ENST00000699839.1:c.1330+2T>A	ENSP00000514637.1:n.1330+2T>A
ENST00000699840.1:c.1141+2T>A	ENSP00000514638.1:n.1141+2T>A
ENST00000699916.1:c.*401+2T>A	ENSP00000514684.1:n.*401+2T>A
ENST00000699917.1:c.*593+2T>A	ENSP00000514685.1:n.*593+2T>A
ENST00000699918.1:c.*645+2T>A	ENSP00000514686.1:n.*645+2T>A
ENST00000699919.1:c.*731+2T>A	ENSP00000514687.1:n.*731+2T>A
ENST00000699920.1:c.*780+2T>A	ENSP00000514688.1:n.*780+2T>A
ENST00000699928.1:c.988+2175T>A	ENSP00000514693.1:n.988+2175T>A
ENST00000699929.1:c.*445+2T>A	ENSP00000514694.1:n.*445+2T>A
ENST00000699930.1:c.1036+2T>A	ENSP00000514695.1:n.1036+2T>A
ENST00000699931.1:n.2572+2T>A
ENST00000699932.1:c.*362+2T>A	ENSP00000514696.1:n.*362+2T>A
ENST00000699933.1:n.1126T>A
ENST00000699951.1:c.*240+2T>A	ENSP00000514706.1:n.*240+2T>A
ENST00000699952.1:c.803+7528T>A	ENSP00000514707.1:n.803+7528T>A
ENST00000699953.1:c.*251+2T>A	ENSP00000514708.1:n.*251+2T>A
ENST00000699954.1:c.*445+2T>A	ENSP00000514709.1:n.*445+2T>A
ENST00000265849.12:c.1144+2T>A MANE Select	ENSP00000265849.7:n.1144+2T>A
ENST00000642292.1:c.739+2T>A	ENSP00000495524.1:n.739+2T>A
ENST00000642456.1:c.739+2T>A	ENSP00000493814.1:n.739+2T>A
ENST00000643595.1:c.*543+2T>A	ENSP00000494497.1:n.*543+2T>A
ENST00000644110.1:c.826+2T>A	ENSP00000496392.1:n.826+2T>A
ENST00000265849.11:c.1144+2T>A	ENSP00000265849.7:n.1144+2T>A
ENST00000382321.5:c.804-6807T>A	ENSP00000371758.4:n.804-6807T>A
ENST00000406569.7:n.1144+2T>A
ENST00000441476.6:c.826+2T>A	ENSP00000392843.2:n.826+2T>A
ENST00000469652.1:n.63-6893T>A
NM_000535.5:c.1144+2T>A , LRG_161t1:c.1144+2T>A	NP_000526.1:n.1144+2T>A
NR_003085.2:n.1226+2T>A
XM_006715742.2:c.1138+2T>A	XP_006715805.1:n.1138+2T>A
XM_006715744.2:c.211+2T>A	XP_006715807.1:n.211+2T>A
XM_011515427.1:c.1189+2T>A	XP_011513729.1:n.1189+2T>A
XM_011515428.1:c.1033+2175T>A	XP_011513730.1:n.1033+2175T>A
XM_011515429.1:c.826+2T>A	XP_011513731.1:n.826+2T>A
XM_011515430.1:c.826+2T>A	XP_011513732.1:n.826+2T>A
NM_000535.6:c.1144+2T>A	NP_000526.2:n.1144+2T>A
NM_001322003.1:c.739+2T>A	NP_001308932.1:n.739+2T>A
NM_001322004.1:c.739+2T>A	NP_001308933.1:n.739+2T>A
NM_001322005.1:c.739+2T>A	NP_001308934.1:n.739+2T>A
NM_001322006.1:c.988+2175T>A	NP_001308935.1:n.988+2175T>A
NM_001322007.1:c.826+2T>A	NP_001308936.1:n.826+2T>A
NM_001322008.1:c.826+2T>A	NP_001308937.1:n.826+2T>A
NM_001322009.1:c.739+2T>A	NP_001308938.1:n.739+2T>A
NM_001322010.1:c.583+2175T>A	NP_001308939.1:n.583+2175T>A
NM_001322011.1:c.211+2T>A	NP_001308940.1:n.211+2T>A
NM_001322012.1:c.211+2T>A	NP_001308941.1:n.211+2T>A
NM_001322013.1:c.571+2T>A	NP_001308942.1:n.571+2T>A
NM_001322014.1:c.1144+2T>A	NP_001308943.1:n.1144+2T>A
NM_001322015.1:c.835+2T>A	NP_001308944.1:n.835+2T>A
NR_136154.1:n.1231+2T>A
XM_006715744.4:c.211+2T>A	XP_006715807.1:n.211+2T>A
XM_017012342.2:c.211+2T>A	XP_016867831.1:n.211+2T>A
XM_024446800.1:c.583+2175T>A	XP_024302568.1:n.583+2175T>A
NM_000535.7:c.1144+2T>A MANE Select	NP_000526.2:n.1144+2T>A
NM_001322003.2:c.739+2T>A	NP_001308932.1:n.739+2T>A
NM_001322004.2:c.739+2T>A	NP_001308933.1:n.739+2T>A
NM_001322005.2:c.739+2T>A	NP_001308934.1:n.739+2T>A
NM_001322006.2:c.988+2175T>A	NP_001308935.1:n.988+2175T>A
NM_001322008.2:c.826+2T>A	NP_001308937.1:n.826+2T>A
NM_001322009.2:c.739+2T>A	NP_001308938.1:n.739+2T>A
NM_001322010.2:c.583+2175T>A	NP_001308939.1:n.583+2175T>A
NM_001322011.2:c.211+2T>A	NP_001308940.1:n.211+2T>A
NM_001322012.2:c.211+2T>A	NP_001308941.1:n.211+2T>A
NM_001322013.2:c.571+2T>A	NP_001308942.1:n.571+2T>A
NM_001322014.2:c.1144+2T>A	NP_001308943.1:n.1144+2T>A
NM_001322015.2:c.835+2T>A	NP_001308944.1:n.835+2T>A
NM_001322007.2:c.826+2T>A	NP_001308936.1:n.826+2T>A