Canonical Allele Identifier: CA7980838
Gene: CLN3 HGNC NCBI

Linked Data

ClinVar Variation Id: 588177
dbSNP Id: rs750008067

Genomic Alleles

HGVS Genome Assembly
NC_000016.10:g.28484054C>T , CM000678.2:g.28484054C>T GRCh38
NC_000016.9:g.28495375C>T , CM000678.1:g.28495375C>T GRCh37
NC_000016.8:g.28402876C>T NCBI36
NG_008654.2:g.13249G>A , LRG_689:g.13249G>A

Transcript Alleles

HGVS Amino-acid change
ENST00000333496.14:c.670G>A ENSP00000329171.9:p.Ala224Thr
ENST00000355477.10:c.598G>A ENSP00000347660.7:p.Ala200Thr
ENST00000357857.14:c.580G>A ENSP00000350523.9:p.Ala194Thr
ENST00000359984.12:c.742G>A ENSP00000353073.9:p.Ala248Thr
ENST00000360019.8:c.670G>A ENSP00000353116.3:p.Ala224Thr
ENST00000395653.9:c.283G>A ENSP00000379014.5:p.Ala95Thr
ENST00000561689.6:n.1027G>A
ENST00000564091.6:c.82G>A ENSP00000454466.2:p.Ala28Thr
ENST00000565316.6:c.742G>A ENSP00000456117.1:p.Ala248Thr
ENST00000565778.6:c.373G>A ENSP00000458015.1:p.Ala125Thr
ENST00000566083.6:n.1200G>A
ENST00000566824.6:n.722G>A
ENST00000567963.6:c.580G>A ENSP00000455387.2:p.Ala194Thr
ENST00000568076.6:n.869G>A
ENST00000568422.6:c.525G>A ENSP00000455549.2:p.Ala175=
ENST00000568452.6:n.845G>A
ENST00000568472.6:n.618G>A
ENST00000568497.6:c.-228G>A ENSP00000456414.2:n.-228G>A
ENST00000568558.6:c.445G>A ENSP00000455603.2:p.Ala149Thr
ENST00000569430.7:c.742G>A ENSP00000454229.1:p.Ala248Thr
ENST00000628023.3:c.*38G>A ENSP00000486178.1:n.*38G>A
ENST00000635861.1:c.*266G>A ENSP00000490034.1:n.*266G>A
ENST00000635887.1:c.742G>A ENSP00000490709.1:p.Ala248Thr
ENST00000635958.1:n.853G>A
ENST00000635973.1:c.493G>A ENSP00000490363.1:p.Ala165Thr
ENST00000636017.1:c.*266G>A ENSP00000490538.1:n.*266G>A
ENST00000636078.1:n.784G>A
ENST00000636147.2:c.742G>A MANE Select ENSP00000490105.1:p.Ala248Thr
ENST00000636172.1:c.*266G>A ENSP00000490505.1:n.*266G>A
ENST00000636228.1:c.436G>A ENSP00000489627.1:p.Ala146Thr
ENST00000636351.1:n.462G>A
ENST00000636503.1:c.742G>A ENSP00000489824.1:p.Ala248Thr
ENST00000636685.1:n.249G>A
ENST00000636766.1:c.742G>A ENSP00000489841.1:p.Ala248Thr
ENST00000636839.1:n.894G>A
ENST00000636853.1:n.1657G>A
ENST00000636866.1:c.742G>A ENSP00000490880.1:p.Ala248Thr
ENST00000636907.1:n.893G>A
ENST00000636977.1:n.1810G>A
ENST00000637050.1:n.829G>A
ENST00000637100.1:c.742G>A ENSP00000490394.1:p.Ala248Thr
ENST00000637107.1:c.*266G>A ENSP00000490248.1:n.*266G>A
ENST00000637184.1:c.742G>A ENSP00000489952.1:p.Ala248Thr
ENST00000637299.1:c.*551G>A ENSP00000489823.1:n.*551G>A
ENST00000637376.1:c.742G>A ENSP00000490758.1:p.Ala248Thr
ENST00000637578.1:c.*266G>A ENSP00000490206.1:n.*266G>A
ENST00000637699.1:c.525G>A ENSP00000490049.1:p.Ala175=
ENST00000637745.1:c.81G>A
ENST00000637871.1:c.*266G>A ENSP00000490670.1:n.*266G>A
ENST00000333496.13:c.670G>A ENSP00000329171.9:p.Ala224Thr
ENST00000355477.9:c.525G>A ENSP00000347660.6:p.Ala175=
ENST00000357806.11:c.445G>A ENSP00000350457.7:p.Ala149Thr
ENST00000357857.13:c.580G>A ENSP00000350523.9:p.Ala194Thr
ENST00000359984.11:c.436G>A ENSP00000353073.8:p.Ala146Thr
ENST00000360019.6:c.742G>A ENSP00000353116.2:p.Ala248Thr
ENST00000395653.8:c.442G>A ENSP00000379014.4:p.Ala148Thr
ENST00000561689.5:n.583G>A
ENST00000563874.5:n.2096G>A
ENST00000564574.5:n.790G>A
ENST00000565047.1:n.336G>A
ENST00000565140.5:c.525G>A ENSP00000455342.1:p.Ala175=
ENST00000565316.5:c.742G>A ENSP00000456117.1:p.Ala248Thr
ENST00000565688.5:c.493G>A ENSP00000456122.1:p.Ala165Thr
ENST00000565778.5:c.373G>A ENSP00000458015.1:p.Ala125Thr
ENST00000566057.5:c.356G>A ENSP00000456693.1:n.356G>A
ENST00000566083.5:n.973G>A
ENST00000566824.5:n.791G>A
ENST00000567495.5:c.525G>A ENSP00000456013.1:p.Ala175=
ENST00000567963.5:c.742G>A ENSP00000455387.1:p.Ala248Thr
ENST00000568076.5:n.525G>A
ENST00000568224.4:c.508G>A ENSP00000454253.1:p.Ala170Thr
ENST00000568422.5:c.378G>A ENSP00000455549.1:p.Ala126=
ENST00000568452.5:n.742G>A
ENST00000568472.5:n.222G>A
ENST00000568497.5:c.*38G>A ENSP00000456414.1:n.*38G>A
ENST00000568558.5:c.283G>A ENSP00000455603.1:p.Ala95Thr
ENST00000569030.5:c.461-1382G>A ENSP00000454680.1:n.461-1382G>A
ENST00000569430.5:c.742G>A ENSP00000454229.1:p.Ala248Thr
ENST00000628023.2:c.*38G>A ENSP00000486178.1:n.*38G>A
ENST00000631023.2:c.742G>A ENSP00000486616.1:p.Ala248Thr
NM_000086.2:c.742G>A , LRG_689t1:c.742G>A NP_000077.1:p.Ala248Thr
NM_001042432.1:c.742G>A , LRG_689t2:c.742G>A NP_001035897.1:p.Ala248Thr
NM_001286104.1:c.670G>A NP_001273033.1:p.Ala224Thr
NM_001286105.1:c.442G>A NP_001273034.1:p.Ala148Thr
NM_001286109.1:c.508G>A NP_001273038.1:p.Ala170Thr
NM_001286110.1:c.580G>A NP_001273039.1:p.Ala194Thr
NM_001042432.2:c.742G>A MANE Select NP_001035897.1:p.Ala248Thr
NM_001286104.2:c.670G>A NP_001273033.1:p.Ala224Thr
NM_001286105.2:c.442G>A NP_001273034.1:p.Ala148Thr
NM_001286109.2:c.508G>A NP_001273038.1:p.Ala170Thr
NM_001286110.2:c.580G>A NP_001273039.1:p.Ala194Thr