Canonical Allele Identifier: CA59810178

Gene: SCN9A SCN1A-AS1

Linked Data

• dbSNP Id: rs368561103
• MyVariant Identifiers: chr2:g.167085170A>T (hg19) ; chr2:g.166228660A>T (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.166228660A>T , CM000664.2:g.166228660A>T	GRCh38
NC_000002.11:g.167085170A>T , CM000664.1:g.167085170A>T	GRCh37
NC_000002.10:g.166793416A>T	NCBI36
NG_012798.1:g.152328T>A , LRG_369:g.152328T>A

Transcript Alleles

HGVS	Amino-acid change
ENST00000303354.11:c.4206+31T>A (SCN9A)	ENSP00000304748.7:n.4206+31T>A
ENST00000409435.6:c.4206+31T>A (SCN9A)	ENSP00000386330.2:n.4206+31T>A
ENST00000642356.2:c.4206+31T>A (SCN9A) MANE Select	ENSP00000495601.1:n.4206+31T>A
ENST00000644316.1:c.4050+31T>A (SCN9A)	ENSP00000493939.1:n.4050+31T>A
ENST00000645907.1:c.4173+31T>A (SCN9A)	ENSP00000495983.1:n.4173+31T>A
ENST00000303354.10:c.4206+31T>A (SCN9A)	ENSP00000304748.7:n.4206+31T>A
ENST00000409435.5:c.4206+31T>A (SCN9A)	ENSP00000386330.1:n.4206+31T>A
ENST00000409672.5:c.4173+31T>A (SCN9A)	ENSP00000386306.1:n.4173+31T>A
NM_002977.3:c.4173+31T>A , LRG_369t1:c.4173+31T>A (SCN9A)	NP_002968.1:n.4173+31T>A
NR_110260.1:n.612-19535A>T (SCN1A-AS1)
XM_005246757.1:c.4206+31T>A (SCN9A)	XP_005246814.1:n.4206+31T>A
XM_011511616.1:c.4206+31T>A (SCN9A)	XP_011509918.1:n.4206+31T>A
XM_011511617.1:c.4206+31T>A (SCN9A)	XP_011509919.1:n.4206+31T>A
XM_011511618.1:c.4173+31T>A (SCN9A)	XP_011509920.1:n.4173+31T>A
XM_011511619.1:c.4206+31T>A (SCN9A)	XP_011509921.1:n.4206+31T>A
NM_001365536.1:c.4206+31T>A (SCN9A) MANE Select	NP_001352465.1:n.4206+31T>A
XM_011511616.3:c.4206+31T>A (SCN9A)	XP_011509918.1:n.4206+31T>A
XM_011511617.2:c.4206+31T>A (SCN9A)	XP_011509919.1:n.4206+31T>A
XM_011511618.2:c.4173+31T>A (SCN9A)	XP_011509920.1:n.4173+31T>A
XM_011511619.2:c.4206+31T>A (SCN9A)	XP_011509921.1:n.4206+31T>A
XM_017004668.1:c.3819+31T>A (SCN9A)	XP_016860157.1:n.3819+31T>A
XM_017004669.1:c.3462+31T>A (SCN9A)	XP_016860158.1:n.3462+31T>A