Canonical Allele Identifier: CA513920433

Gene: HPS4

Linked Data

• ClinVar Variation Id: 1655597
• ClinVar RCV Id: RCV002159046
• dbSNP Id: rs775986716
• gnomAD v2: 22-26853908-C-A
• gnomAD v3: 22-26457942-C-A
• gnomAD v4: 22-26457942-C-A
• MyVariant Identifiers: chr22:g.26853908C>A (hg19) ; chr22:g.26457942C>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000022.11:g.26457942C>A , CM000684.2:g.26457942C>A	GRCh38
NC_000022.10:g.26853908C>A , CM000684.1:g.26853908C>A	GRCh37
NC_000022.9:g.25183908C>A	NCBI36
NG_009763.2:g.30922G>T , LRG_590:g.30922G>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000422379.3:c.1926G>T	ENSP00000415081.3:p.Pro642=
ENST00000473782.2:c.1872G>T	ENSP00000514223.1:p.Pro624=
ENST00000483631.2:c.1077G>T	ENSP00000514228.1:p.Pro359=
ENST00000491142.2:c.1872G>T	ENSP00000514221.1:p.Pro624=
ENST00000699226.1:n.4798G>T
ENST00000699227.1:c.*1216G>T	ENSP00000514220.1:n.*1216G>T
ENST00000699228.1:n.2422G>T
ENST00000699229.1:n.1289G>T
ENST00000699230.1:n.2595G>T
ENST00000699231.1:n.4884G>T
ENST00000699232.1:n.3228G>T
ENST00000699233.1:n.1743G>T
ENST00000699234.1:c.*1216G>T	ENSP00000514222.1:n.*1216G>T
ENST00000699235.1:c.1077G>T	ENSP00000514224.1:p.Pro359=
ENST00000699236.1:c.*1061G>T	ENSP00000514225.1:n.*1061G>T
ENST00000699237.1:c.*1061G>T	ENSP00000514226.1:n.*1061G>T
ENST00000699238.1:c.*1415G>T	ENSP00000514227.1:n.*1415G>T
ENST00000699239.1:n.4626G>T
ENST00000699240.1:c.*1529G>T	ENSP00000514229.1:n.*1529G>T
ENST00000699241.1:c.*2064G>T	ENSP00000514230.1:n.*2064G>T
ENST00000699242.1:c.1782G>T	ENSP00000514231.1:p.Pro594=
ENST00000699243.1:c.*1216G>T	ENSP00000514232.1:n.*1216G>T
ENST00000699244.1:c.1725G>T	ENSP00000514233.1:p.Pro575=
ENST00000699245.1:n.1164G>T
ENST00000699246.1:c.*1243G>T	ENSP00000514234.1:n.*1243G>T
ENST00000699247.1:c.828G>T	ENSP00000514235.1:p.Pro276=
ENST00000699248.1:n.3784-4538G>T
ENST00000699249.1:c.*1058-4538G>T	ENSP00000514236.1:n.*1058-4538G>T
ENST00000699250.1:c.1714-4538G>T	ENSP00000514237.1:n.1714-4538G>T
ENST00000699251.1:c.1872G>T	ENSP00000514238.1:p.Pro624=
ENST00000699252.1:n.2422G>T
ENST00000398145.7:c.1872G>T MANE Select	ENSP00000381213.2:p.Pro624=
ENST00000336873.9:c.1872G>T	ENSP00000338457.5:p.Pro624=
ENST00000398145.6:c.1872G>T	ENSP00000381213.2:p.Pro624=
ENST00000402105.7:c.1857G>T	ENSP00000384185.3:p.Pro619=
ENST00000429411.5:c.*1444G>T	ENSP00000399705.1:n.*1444G>T
ENST00000439453.5:c.*1390G>T	ENSP00000406764.1:n.*1390G>T
ENST00000464362.5:c.*2203G>T	ENSP00000430291.1:n.*2203G>T
ENST00000466781.5:n.4731G>T
ENST00000485842.5:n.563G>T
ENST00000493455.6:n.435G>T
ENST00000496385.5:n.2480-4538G>T
ENST00000519774.5:n.258G>T
NM_022081.5:c.1872G>T , LRG_590t1:c.1872G>T	NP_071364.4:p.Pro624=
NM_152841.2:c.1857G>T , LRG_590t2:c.1857G>T	NP_690054.1:p.Pro619=
NR_073135.1:n.2558G>T
NR_073136.1:n.2320G>T
XM_006724353.2:c.1926G>T	XP_006724416.1:p.Pro642=
XM_006724354.2:c.1926G>T	XP_006724417.1:p.Pro642=
XM_006724360.2:c.1359G>T	XP_006724423.1:p.Pro453=
XM_011530485.1:c.2004G>T	XP_011528787.1:p.Pro668=
XM_011530486.1:c.2004G>T	XP_011528788.1:p.Pro668=
XM_011530487.1:c.2004G>T	XP_011528789.1:p.Pro668=
XM_011530488.1:c.2004G>T	XP_011528790.1:p.Pro668=
XM_011530489.1:c.2004G>T	XP_011528791.1:p.Pro668=
XM_011530490.1:c.1950G>T	XP_011528792.1:p.Pro650=
XM_011530491.1:c.2004G>T	XP_011528793.1:p.Pro668=
XM_011530492.1:c.2004G>T	XP_011528794.1:p.Pro668=
XM_011530493.1:c.1846-4538G>T	XP_011528795.1:n.1846-4538G>T
XM_011530494.1:c.1212G>T	XP_011528796.1:p.Pro404=
XM_011530495.1:c.1359G>T	XP_011528797.1:p.Pro453=
XM_011530496.1:c.1212G>T	XP_011528798.1:p.Pro404=
XR_937947.1:n.2663G>T
NM_001349896.1:c.1872G>T	NP_001336825.1:p.Pro624=
NM_001349898.1:c.1872G>T	NP_001336827.1:p.Pro624=
NM_001349899.1:c.1872G>T	NP_001336828.1:p.Pro624=
NM_001349900.1:c.1926G>T	NP_001336829.1:p.Pro642=
NM_001349901.1:c.1926G>T	NP_001336830.1:p.Pro642=
NM_001349902.1:c.1714-4538G>T	NP_001336831.1:n.1714-4538G>T
NM_001349903.1:c.1714-4538G>T	NP_001336832.1:n.1714-4538G>T
NM_001349904.1:c.1872G>T	NP_001336833.1:p.Pro624=
NM_001349905.1:c.1872G>T	NP_001336834.1:p.Pro624=
NR_146311.1:n.2649G>T
NR_146312.1:n.2474G>T
NR_146313.1:n.2494G>T
NR_146314.1:n.2625G>T
NR_146315.1:n.2565G>T
NR_146316.1:n.2540G>T
XM_006724360.3:c.1359G>T	XP_006724423.1:p.Pro453=
XM_011530485.2:c.2004G>T	XP_011528787.1:p.Pro668=
XM_011530486.2:c.2004G>T	XP_011528788.1:p.Pro668=
XM_011530487.2:c.2004G>T	XP_011528789.1:p.Pro668=
XM_011530488.2:c.2004G>T	XP_011528790.1:p.Pro668=
XM_011530489.2:c.2004G>T	XP_011528791.1:p.Pro668=
XM_011530490.3:c.1950G>T	XP_011528792.1:p.Pro650=
XM_011530491.3:c.2004G>T	XP_011528793.1:p.Pro668=
XM_011530492.2:c.2004G>T	XP_011528794.1:p.Pro668=
XM_011530493.3:c.1846-4538G>T	XP_011528795.1:n.1846-4538G>T
XM_011530494.2:c.1212G>T	XP_011528796.1:p.Pro404=
XM_011530495.2:c.1359G>T	XP_011528797.1:p.Pro453=
XM_011530496.2:c.1212G>T	XP_011528798.1:p.Pro404=
XM_017029045.2:c.1950G>T	XP_016884534.1:p.Pro650=
XM_017029046.2:c.1872G>T	XP_016884535.1:p.Pro624=
XM_017029047.2:c.1792-4538G>T	XP_016884536.1:n.1792-4538G>T
XM_017029052.2:c.1464G>T	XP_016884541.1:p.Pro488=
XM_017029053.1:c.1449G>T	XP_016884542.1:p.Pro483=
XM_017029056.2:c.1077G>T	XP_016884545.1:p.Pro359=
XM_017029061.2:c.1077G>T	XP_016884550.1:p.Pro359=
XM_017029062.2:c.1077G>T	XP_016884551.1:p.Pro359=
XM_017029063.2:c.1077G>T	XP_016884552.1:p.Pro359=
XM_017029064.2:c.1077G>T	XP_016884553.1:p.Pro359=
XM_024452298.1:c.1245G>T	XP_024308066.1:p.Pro415=
XM_024452299.1:c.1077G>T	XP_024308067.1:p.Pro359=
XM_024452300.1:c.1077G>T	XP_024308068.1:p.Pro359=
XR_001755361.2:n.2580G>T
XR_001755364.1:n.2278-4538G>T
XR_001755366.2:n.3109G>T
XR_002958721.1:n.2500-4538G>T
XR_937947.2:n.2658G>T
NM_001349898.2:c.1872G>T	NP_001336827.1:p.Pro624=
NM_001349899.2:c.1872G>T	NP_001336828.1:p.Pro624=
NM_001349900.2:c.1926G>T	NP_001336829.1:p.Pro642=
NM_001349903.2:c.1714-4538G>T	NP_001336832.1:n.1714-4538G>T
NM_001349904.2:c.1872G>T	NP_001336833.1:p.Pro624=
NR_073136.2:n.2127G>T
NR_146311.2:n.2569G>T
NR_146313.2:n.2414G>T
NR_146315.2:n.2485G>T
NM_022081.6:c.1872G>T MANE Select	NP_071364.4:p.Pro624=
NR_146316.2:n.2460G>T