Canonical Allele Identifier: CA366737849

Gene: PMS2

Linked Data

• ClinVar Variation Id: 455688
• ClinVar RCV Id: RCV000554860 ; RCV000570475
• dbSNP Id: rs1456057054
• gnomAD v2: 7-6022462-G-A
• gnomAD v4: 7-5982831-G-A
• MyVariant Identifiers: chr7:g.6022462G>A (hg19) ; chr7:g.5982831G>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5982831G>A , CM000669.2:g.5982831G>A	GRCh38
NC_000007.13:g.6022462G>A , CM000669.1:g.6022462G>A	GRCh37
NC_000007.12:g.5988988G>A	NCBI36
NG_008466.1:g.31276C>T , LRG_161:g.31276C>T

Transcript Alleles

HGVS	Amino-acid change
ENST00000699814.2:c.*1563C>T	ENSP00000514615.2:n.*1563C>T
ENST00000699840.2:c.2164C>T	ENSP00000514638.2:p.Leu722Phe
ENST00000699930.2:c.2059C>T	ENSP00000514695.2:p.Leu687Phe
ENST00000406569.8:c.1678+4256C>T	ENSP00000514464.1:n.1678+4256C>T
ENST00000644110.2:c.*1761C>T	ENSP00000496392.2:n.*1761C>T
ENST00000699752.1:c.2011C>T	ENSP00000514561.1:p.Leu671Phe
ENST00000699753.1:c.*1588C>T	ENSP00000514562.1:n.*1588C>T
ENST00000699754.1:c.1969C>T	ENSP00000514563.1:p.Leu657Phe
ENST00000699755.1:c.*1566C>T	ENSP00000514564.1:n.*1566C>T
ENST00000699756.1:c.*1754C>T	ENSP00000514565.1:n.*1754C>T
ENST00000699757.1:c.*1424C>T	ENSP00000514566.1:n.*1424C>T
ENST00000699758.1:c.*1424C>T	ENSP00000514567.1:n.*1424C>T
ENST00000699759.1:n.3021C>T
ENST00000699760.1:c.1849C>T	ENSP00000514568.1:p.Leu617Phe
ENST00000699761.1:c.1762C>T	ENSP00000514569.1:p.Leu588Phe
ENST00000699762.1:c.1594C>T	ENSP00000514570.1:p.Leu532Phe
ENST00000699763.1:c.*1257C>T	ENSP00000514571.1:n.*1257C>T
ENST00000699764.1:c.*485C>T	ENSP00000514572.1:n.*485C>T
ENST00000699765.1:c.*1263C>T	ENSP00000514573.1:n.*1263C>T
ENST00000699766.1:c.2167C>T	ENSP00000514574.1:p.Leu723Phe
ENST00000699767.1:c.2167C>T	ENSP00000514575.1:p.Leu723Phe
ENST00000699768.1:c.2167C>T	ENSP00000514576.1:p.Leu723Phe
ENST00000699811.1:c.1762C>T	ENSP00000514614.1:p.Leu588Phe
ENST00000699813.1:n.2280C>T
ENST00000699814.1:c.1790C>T
ENST00000699815.1:c.*1698C>T	ENSP00000514616.1:n.*1698C>T
ENST00000699816.1:c.*1057C>T	ENSP00000514617.1:n.*1057C>T
ENST00000699817.1:c.*1761C>T	ENSP00000514618.1:n.*1761C>T
ENST00000699818.1:c.1762C>T	ENSP00000514619.1:p.Leu588Phe
ENST00000699819.1:c.*1324C>T	ENSP00000514620.1:n.*1324C>T
ENST00000699820.1:c.*105C>T	ENSP00000514621.1:n.*105C>T
ENST00000699821.1:c.1762C>T	ENSP00000514622.1:p.Leu588Phe
ENST00000699822.1:c.*1619C>T	ENSP00000514623.1:n.*1619C>T
ENST00000699823.1:c.1762C>T	ENSP00000514624.1:p.Leu588Phe
ENST00000699824.1:c.*1670C>T	ENSP00000514625.1:n.*1670C>T
ENST00000699825.1:c.1606C>T	ENSP00000514626.1:p.Leu536Phe
ENST00000699826.1:c.*1566C>T	ENSP00000514627.1:n.*1566C>T
ENST00000699827.1:c.1999C>T	ENSP00000514628.1:p.Leu667Phe
ENST00000699828.1:c.*1257C>T	ENSP00000514629.1:n.*1257C>T
ENST00000699833.1:n.3939C>T
ENST00000699837.1:c.1762C>T	ENSP00000514635.1:p.Leu588Phe
ENST00000699838.1:c.*2067C>T	ENSP00000514636.1:n.*2067C>T
ENST00000699839.1:c.2353C>T	ENSP00000514637.1:p.Leu785Phe
ENST00000699916.1:c.*1424C>T	ENSP00000514684.1:n.*1424C>T
ENST00000699917.1:c.*1616C>T	ENSP00000514685.1:n.*1616C>T
ENST00000699918.1:c.*1668C>T	ENSP00000514686.1:n.*1668C>T
ENST00000699919.1:c.*1754C>T	ENSP00000514687.1:n.*1754C>T
ENST00000699920.1:c.*1803C>T	ENSP00000514688.1:n.*1803C>T
ENST00000699928.1:c.*105C>T	ENSP00000514693.1:n.*105C>T
ENST00000699951.1:c.*1263C>T	ENSP00000514706.1:n.*1263C>T
ENST00000699952.1:c.804-9289C>T	ENSP00000514707.1:n.804-9289C>T
ENST00000265849.12:c.2167C>T MANE Select	ENSP00000265849.7:p.Leu723Phe
ENST00000642292.1:c.1762C>T	ENSP00000495524.1:p.Leu588Phe
ENST00000642456.1:c.1762C>T	ENSP00000493814.1:p.Leu588Phe
ENST00000643595.1:c.*1566C>T	ENSP00000494497.1:n.*1566C>T
ENST00000644110.1:c.1849C>T	ENSP00000496392.1:p.Leu617Phe
ENST00000265849.11:c.2167C>T	ENSP00000265849.7:p.Leu723Phe
ENST00000382321.5:c.964C>T	ENSP00000371758.4:p.Leu322Phe
ENST00000406569.7:n.1678+4256C>T
ENST00000441476.6:c.1849C>T	ENSP00000392843.2:p.Leu617Phe
NM_000535.5:c.2167C>T , LRG_161t1:c.2167C>T	NP_000526.1:p.Leu723Phe
NR_003085.2:n.2249C>T
XM_006715742.2:c.2161C>T	XP_006715805.1:p.Leu721Phe
XM_006715744.2:c.1234C>T	XP_006715807.1:p.Leu412Phe
XM_011515427.1:c.2212C>T	XP_011513729.1:p.Leu738Phe
XM_011515428.1:c.2056C>T	XP_011513730.1:p.Leu686Phe
XM_011515429.1:c.1849C>T	XP_011513731.1:p.Leu617Phe
XM_011515430.1:c.1849C>T	XP_011513732.1:p.Leu617Phe
NM_000535.6:c.2167C>T	NP_000526.2:p.Leu723Phe
NM_001322003.1:c.1762C>T	NP_001308932.1:p.Leu588Phe
NM_001322004.1:c.1762C>T	NP_001308933.1:p.Leu588Phe
NM_001322005.1:c.1762C>T	NP_001308934.1:p.Leu588Phe
NM_001322006.1:c.2011C>T	NP_001308935.1:p.Leu671Phe
NM_001322007.1:c.1849C>T	NP_001308936.1:p.Leu617Phe
NM_001322008.1:c.1849C>T	NP_001308937.1:p.Leu617Phe
NM_001322009.1:c.1762C>T	NP_001308938.1:p.Leu588Phe
NM_001322010.1:c.1606C>T	NP_001308939.1:p.Leu536Phe
NM_001322011.1:c.1234C>T	NP_001308940.1:p.Leu412Phe
NM_001322012.1:c.1234C>T	NP_001308941.1:p.Leu412Phe
NM_001322013.1:c.1594C>T	NP_001308942.1:p.Leu532Phe
NM_001322014.1:c.2167C>T	NP_001308943.1:p.Leu723Phe
NM_001322015.1:c.1858C>T	NP_001308944.1:p.Leu620Phe
NR_136154.1:n.2254C>T
XM_006715744.4:c.1234C>T	XP_006715807.1:p.Leu412Phe
XM_017012342.2:c.1234C>T	XP_016867831.1:p.Leu412Phe
XM_024446800.1:c.1606C>T	XP_024302568.1:p.Leu536Phe
NM_000535.7:c.2167C>T MANE Select	NP_000526.2:p.Leu723Phe
NM_001322003.2:c.1762C>T	NP_001308932.1:p.Leu588Phe
NM_001322004.2:c.1762C>T	NP_001308933.1:p.Leu588Phe
NM_001322005.2:c.1762C>T	NP_001308934.1:p.Leu588Phe
NM_001322006.2:c.2011C>T	NP_001308935.1:p.Leu671Phe
NM_001322008.2:c.1849C>T	NP_001308937.1:p.Leu617Phe
NM_001322009.2:c.1762C>T	NP_001308938.1:p.Leu588Phe
NM_001322010.2:c.1606C>T	NP_001308939.1:p.Leu536Phe
NM_001322011.2:c.1234C>T	NP_001308940.1:p.Leu412Phe
NM_001322012.2:c.1234C>T	NP_001308941.1:p.Leu412Phe
NM_001322013.2:c.1594C>T	NP_001308942.1:p.Leu532Phe
NM_001322014.2:c.2167C>T	NP_001308943.1:p.Leu723Phe
NM_001322015.2:c.1858C>T	NP_001308944.1:p.Leu620Phe
NM_001322007.2:c.1849C>T	NP_001308936.1:p.Leu617Phe