Canonical Allele Identifier: CA349071580

Gene: SCN1A

Linked Data

• gnomAD v4: 2-165994224-G-A
• COSMIC: COSM343603
• MyVariant Identifiers: chr2:g.166850734G>A (hg19) ; chr2:g.165994224G>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.165994224G>A , CM000664.2:g.165994224G>A	GRCh38
NC_000002.11:g.166850734G>A , CM000664.1:g.166850734G>A	GRCh37
NC_000002.10:g.166558980G>A	NCBI36
NG_011906.1:g.84416C>T , LRG_8:g.84416C>T

Transcript Alleles

HGVS	Amino-acid change
ENST00000689288.1:c.*2810C>T	ENSP00000509637.1:n.*2810C>T
ENST00000303395.9:c.4774C>T	ENSP00000303540.4:p.Leu1592Phe
ENST00000635750.1:c.4741C>T	ENSP00000490799.1:p.Leu1581Phe
ENST00000635776.1:c.4741C>T	ENSP00000490692.1:p.Leu1581Phe
ENST00000636194.1:c.*2267C>T	ENSP00000490288.1:n.*2267C>T
ENST00000637038.1:c.1636C>T
ENST00000637988.1:c.4741C>T	ENSP00000490780.1:p.Leu1581Phe
ENST00000640036.1:c.4741C>T	ENSP00000491573.1:p.Leu1581Phe
ENST00000641575.1:c.4738C>T	ENSP00000492917.1:p.Leu1580Phe
ENST00000641603.1:c.4492C>T	ENSP00000492945.1:p.Leu1498Phe
ENST00000641996.1:c.*4328C>T	ENSP00000493054.1:n.*4328C>T
ENST00000671940.1:c.*2717C>T	ENSP00000500336.1:n.*2717C>T
ENST00000673490.1:n.7247C>T
ENST00000674923.1:c.4774C>T MANE Select	ENSP00000501589.1:p.Leu1592Phe
ENST00000303395.8:c.4774C>T	ENSP00000303540.4:p.Leu1592Phe
ENST00000375405.7:c.4741C>T	ENSP00000364554.3:p.Leu1581Phe
ENST00000409050.1:c.4690C>T	ENSP00000386312.1:p.Leu1564Phe
ENST00000423058.6:c.4774C>T	ENSP00000407030.2:p.Leu1592Phe
ENST00000625916.1:n.503C>T
NM_001165963.1:c.4774C>T	NP_001159435.1:p.Leu1592Phe
NM_001165964.1:c.4690C>T	NP_001159436.1:p.Leu1564Phe
NM_001202435.1:c.4774C>T	NP_001189364.1:p.Leu1592Phe
NM_006920.4:c.4741C>T , LRG_8t1:c.4741C>T	NP_008851.3:p.Leu1581Phe
NR_110598.1:n.176-21389G>A
XM_011511598.1:c.4774C>T	XP_011509900.1:p.Leu1592Phe
XM_011511599.1:c.4774C>T	XP_011509901.1:p.Leu1592Phe
XM_011511600.1:c.4774C>T	XP_011509902.1:p.Leu1592Phe
XM_011511601.1:c.4774C>T	XP_011509903.1:p.Leu1592Phe
XM_011511602.1:c.4774C>T	XP_011509904.1:p.Leu1592Phe
XM_011511603.1:c.4771C>T	XP_011509905.1:p.Leu1591Phe
XM_011511604.1:c.4741C>T	XP_011509906.1:p.Leu1581Phe
XM_011511605.1:c.4738C>T	XP_011509907.1:p.Leu1580Phe
XM_011511606.1:c.4690C>T	XP_011509908.1:p.Leu1564Phe
XM_011511607.1:c.4492C>T	XP_011509909.1:p.Leu1498Phe
NM_001165963.2:c.4774C>T	NP_001159435.1:p.Leu1592Phe
NM_001165964.2:c.4690C>T	NP_001159436.1:p.Leu1564Phe
NM_001202435.2:c.4774C>T	NP_001189364.1:p.Leu1592Phe
NM_001353948.1:c.4774C>T	NP_001340877.1:p.Leu1592Phe
NM_001353949.1:c.4741C>T	NP_001340878.1:p.Leu1581Phe
NM_001353950.1:c.4741C>T	NP_001340879.1:p.Leu1581Phe
NM_001353951.1:c.4741C>T	NP_001340880.1:p.Leu1581Phe
NM_001353952.1:c.4741C>T	NP_001340881.1:p.Leu1581Phe
NM_001353954.1:c.4738C>T	NP_001340883.1:p.Leu1580Phe
NM_001353955.1:c.4738C>T	NP_001340884.1:p.Leu1580Phe
NM_001353957.1:c.4690C>T	NP_001340886.1:p.Leu1564Phe
NM_001353958.1:c.4690C>T	NP_001340887.1:p.Leu1564Phe
NM_001353960.1:c.4687C>T	NP_001340889.1:p.Leu1563Phe
NM_001353961.1:c.2332C>T	NP_001340890.1:p.Leu778Phe
NM_006920.5:c.4741C>T	NP_008851.3:p.Leu1581Phe
NR_148667.1:n.5210C>T
XR_001738883.1:n.5224C>T
XR_001738884.1:n.5196C>T
NM_001165963.3:c.4774C>T	NP_001159435.1:p.Leu1592Phe
NM_001165964.3:c.4690C>T	NP_001159436.1:p.Leu1564Phe
NM_001202435.3:c.4774C>T	NP_001189364.1:p.Leu1592Phe
NM_001353948.2:c.4774C>T	NP_001340877.1:p.Leu1592Phe
NM_001353949.2:c.4741C>T	NP_001340878.1:p.Leu1581Phe
NM_001353950.2:c.4741C>T	NP_001340879.1:p.Leu1581Phe
NM_001353951.2:c.4741C>T	NP_001340880.1:p.Leu1581Phe
NM_001353952.2:c.4741C>T	NP_001340881.1:p.Leu1581Phe
NM_001353954.2:c.4738C>T	NP_001340883.1:p.Leu1580Phe
NM_001353955.2:c.4738C>T	NP_001340884.1:p.Leu1580Phe
NM_001353957.2:c.4690C>T	NP_001340886.1:p.Leu1564Phe
NM_001353958.2:c.4690C>T	NP_001340887.1:p.Leu1564Phe
NM_001353960.2:c.4687C>T	NP_001340889.1:p.Leu1563Phe
NM_001353961.2:c.2332C>T	NP_001340890.1:p.Leu778Phe
NM_006920.6:c.4741C>T	NP_008851.3:p.Leu1581Phe
NR_148667.2:n.5191C>T
NM_001165963.4:c.4774C>T MANE Select	NP_001159435.1:p.Leu1592Phe