Canonical Allele Identifier: CA342036

Gene: VCAN VCAN-AS1

Linked Data

• ClinVar Variation Id: 21406
• ClinVar RCV Id: RCV000020592
• dbSNP Id: rs80356556
• MyVariant Identifiers: chr5:g.82832821T>A (hg19) ; chr5:g.83537002T>A (hg38)
• PubMed: PMID:16877430 ; PMID:20301747

Genomic Alleles

HGVS	Genome Assembly
NC_000005.10:g.83537002T>A , CM000667.2:g.83537002T>A	GRCh38
NC_000005.9:g.82832821T>A , CM000667.1:g.82832821T>A	GRCh37
NC_000005.8:g.82868577T>A	NCBI36
NG_012682.1:g.70292T>A

Transcript Alleles

HGVS	Amino-acid Change
ENST00000265077.8:c.4004-5T>A (VCAN) MANE Select	ENSP00000265077.3:n.4004-5T>A
ENST00000265077.7:c.4004-5T>A (VCAN)	ENSP00000265077.3:n.4004-5T>A
ENST00000342785.8:c.4004-8535T>A (VCAN)	ENSP00000342768.4:n.4004-8535T>A
ENST00000343200.9:c.1043-5T>A (VCAN)	ENSP00000340062.5:n.1043-5T>A
ENST00000502527.2:c.1043-8535T>A (VCAN)	ENSP00000421362.2:n.1043-8535T>A
ENST00000512590.6:c.3860-8535T>A (VCAN)	ENSP00000425959.2:n.3860-8535T>A
ENST00000513016.5:n.1389T>A (VCAN)
ENST00000513960.5:c.1043-5T>A (VCAN)	ENSP00000426251.1:n.1043-5T>A
ENST00000515397.1:n.296-5T>A (VCAN)
NM_001126336.2:c.1043-8535T>A (VCAN)	NP_001119808.1:n.1043-8535T>A
NM_001164097.1:c.1043-5T>A (VCAN)	NP_001157569.1:n.1043-5T>A
NM_001164098.1:c.4004-8535T>A (VCAN)	NP_001157570.1:n.4004-8535T>A
NM_004385.4:c.4004-5T>A (VCAN)	NP_004376.2:n.4004-5T>A
XM_011543776.1:c.161-2820A>T (VCAN-AS1)	XP_011542078.1:n.161-2820A>T
XM_011543777.1:c.161-2829A>T (VCAN-AS1)	XP_011542079.1:n.161-2829A>T
XM_011543778.1:c.161-2820A>T (VCAN-AS1)	XP_011542080.1:n.161-2820A>T
XM_011543779.1:c.161-2820A>T (VCAN-AS1)	XP_011542081.1:n.161-2820A>T
XM_011543780.1:c.13-2829A>T (VCAN-AS1)	XP_011542082.1:n.13-2829A>T
XM_011543781.1:c.161-2820A>T (VCAN-AS1)	XP_011542083.1:n.161-2820A>T
XM_011543782.1:c.161-2820A>T (VCAN-AS1)	XP_011542084.1:n.161-2820A>T
XR_948512.1:n.471-2820A>T (VCAN-AS1)
XR_948513.1:n.471-2829A>T (VCAN-AS1)
XR_948514.1:n.471-2820A>T (VCAN-AS1)
XR_948515.1:n.471-2829A>T (VCAN-AS1)
XR_948516.1:n.471-2829A>T (VCAN-AS1)
NR_136215.1:n.285-2829A>T (VCAN-AS1)
NM_004385.5:c.4004-5T>A (VCAN) MANE Select	NP_004376.2:n.4004-5T>A
NM_001126336.3:c.1043-8535T>A (VCAN)	NP_001119808.1:n.1043-8535T>A
NM_001164097.2:c.1043-5T>A (VCAN)	NP_001157569.1:n.1043-5T>A
NM_001164098.2:c.4004-8535T>A (VCAN)	NP_001157570.1:n.4004-8535T>A