Canonical Allele Identifier: CA317838

Gene: SCN1A

Linked Data

• ClinVar Variation Id: 206952
• ClinVar RCV Id: RCV000189099
• dbSNP Id: rs796053107
• MyVariant Identifiers: chr2:g.166866255_166866265del (hg19) ; chr2:g.166009745_166009755del (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.166009748_166009758del , CM000664.2:g.166009748_166009758del	GRCh38
NC_000002.11:g.166866258_166866268del , CM000664.1:g.166866258_166866268del	GRCh37
NC_000002.10:g.166574504_166574514del	NCBI36
NG_011906.1:g.68885_68895del , LRG_8:g.68885_68895del

Transcript Alleles

HGVS	Amino-acid Change
ENST00000689288.1:c.*2002_*2012del	ENSP00000509637.1:n.*2002_*2012del
ENST00000303395.9:c.3966_3976del	ENSP00000303540.4:p.Arg1322SerfsTer6
ENST00000635750.1:c.3933_3943del	ENSP00000490799.1:p.Arg1311SerfsTer6
ENST00000635776.1:c.3933_3943del	ENSP00000490692.1:p.Arg1311SerfsTer6
ENST00000636194.1:c.*1459_*1469del	ENSP00000490288.1:n.*1459_*1469del
ENST00000637038.1:c.764_774del
ENST00000637968.1:n.4218_4228del
ENST00000637988.1:c.3933_3943del	ENSP00000490780.1:p.Arg1311SerfsTer6
ENST00000640036.1:c.3933_3943del	ENSP00000491573.1:p.Arg1311SerfsTer6
ENST00000641575.1:c.3930_3940del	ENSP00000492917.1:p.Arg1310SerfsTer6
ENST00000641603.1:c.3966_3976del	ENSP00000492945.1:p.Arg1322SerfsTer6
ENST00000641996.1:c.*3520_*3530del	ENSP00000493054.1:n.*3520_*3530del
ENST00000671940.1:c.*1909_*1919del	ENSP00000500336.1:n.*1909_*1919del
ENST00000673490.1:n.6439_6449del
ENST00000674923.1:c.3966_3976del MANE Select	ENSP00000501589.1:p.Arg1322SerfsTer6
ENST00000303395.8:c.3966_3976del	ENSP00000303540.4:p.Arg1322SerfsTer6
ENST00000375405.7:c.3933_3943del	ENSP00000364554.3:p.Arg1311SerfsTer6
ENST00000409050.1:c.3882_3892del	ENSP00000386312.1:p.Arg1294SerfsTer6
ENST00000423058.6:c.3966_3976del	ENSP00000407030.2:p.Arg1322SerfsTer6
NM_001165963.1:c.3966_3976del	NP_001159435.1:p.Arg1322SerfsTer6
NM_001165964.1:c.3882_3892del	NP_001159436.1:p.Arg1294SerfsTer6
NM_001202435.1:c.3966_3976del	NP_001189364.1:p.Arg1322SerfsTer6
NM_006920.4:c.3933_3943del , LRG_8t1:c.3933_3943del	NP_008851.3:p.Arg1311SerfsTer6
NR_110598.1:n.176-5865_176-5855del
XM_011511598.1:c.3966_3976del	XP_011509900.1:p.Arg1322SerfsTer6
XM_011511599.1:c.3966_3976del	XP_011509901.1:p.Arg1322SerfsTer6
XM_011511600.1:c.3966_3976del	XP_011509902.1:p.Arg1322SerfsTer6
XM_011511601.1:c.3966_3976del	XP_011509903.1:p.Arg1322SerfsTer6
XM_011511602.1:c.3966_3976del	XP_011509904.1:p.Arg1322SerfsTer6
XM_011511603.1:c.3963_3973del	XP_011509905.1:p.Arg1321SerfsTer6
XM_011511604.1:c.3933_3943del	XP_011509906.1:p.Arg1311SerfsTer6
XM_011511605.1:c.3930_3940del	XP_011509907.1:p.Arg1310SerfsTer6
XM_011511606.1:c.3882_3892del	XP_011509908.1:p.Arg1294SerfsTer6
XM_011511607.1:c.3966_3976del	XP_011509909.1:p.Arg1322SerfsTer6
XR_922981.1:n.4150_4160del
NM_001165963.2:c.3966_3976del	NP_001159435.1:p.Arg1322SerfsTer6
NM_001165964.2:c.3882_3892del	NP_001159436.1:p.Arg1294SerfsTer6
NM_001202435.2:c.3966_3976del	NP_001189364.1:p.Arg1322SerfsTer6
NM_001353948.1:c.3966_3976del	NP_001340877.1:p.Arg1322SerfsTer6
NM_001353949.1:c.3933_3943del	NP_001340878.1:p.Arg1311SerfsTer6
NM_001353950.1:c.3933_3943del	NP_001340879.1:p.Arg1311SerfsTer6
NM_001353951.1:c.3933_3943del	NP_001340880.1:p.Arg1311SerfsTer6
NM_001353952.1:c.3933_3943del	NP_001340881.1:p.Arg1311SerfsTer6
NM_001353954.1:c.3930_3940del	NP_001340883.1:p.Arg1310SerfsTer6
NM_001353955.1:c.3930_3940del	NP_001340884.1:p.Arg1310SerfsTer6
NM_001353957.1:c.3882_3892del	NP_001340886.1:p.Arg1294SerfsTer6
NM_001353958.1:c.3882_3892del	NP_001340887.1:p.Arg1294SerfsTer6
NM_001353960.1:c.3879_3889del	NP_001340889.1:p.Arg1293SerfsTer6
NM_001353961.1:c.1524_1534del	NP_001340890.1:p.Arg508SerfsTer6
NM_006920.5:c.3933_3943del	NP_008851.3:p.Arg1311SerfsTer6
NR_148667.1:n.4338_4348del
XR_001738883.1:n.4352_4362del
XR_001738884.1:n.4324_4334del
NM_001165963.3:c.3966_3976del	NP_001159435.1:p.Arg1322SerfsTer6
NM_001165964.3:c.3882_3892del	NP_001159436.1:p.Arg1294SerfsTer6
NM_001202435.3:c.3966_3976del	NP_001189364.1:p.Arg1322SerfsTer6
NM_001353948.2:c.3966_3976del	NP_001340877.1:p.Arg1322SerfsTer6
NM_001353949.2:c.3933_3943del	NP_001340878.1:p.Arg1311SerfsTer6
NM_001353950.2:c.3933_3943del	NP_001340879.1:p.Arg1311SerfsTer6
NM_001353951.2:c.3933_3943del	NP_001340880.1:p.Arg1311SerfsTer6
NM_001353952.2:c.3933_3943del	NP_001340881.1:p.Arg1311SerfsTer6
NM_001353954.2:c.3930_3940del	NP_001340883.1:p.Arg1310SerfsTer6
NM_001353955.2:c.3930_3940del	NP_001340884.1:p.Arg1310SerfsTer6
NM_001353957.2:c.3882_3892del	NP_001340886.1:p.Arg1294SerfsTer6
NM_001353958.2:c.3882_3892del	NP_001340887.1:p.Arg1294SerfsTer6
NM_001353960.2:c.3879_3889del	NP_001340889.1:p.Arg1293SerfsTer6
NM_001353961.2:c.1524_1534del	NP_001340890.1:p.Arg508SerfsTer6
NM_006920.6:c.3933_3943del	NP_008851.3:p.Arg1311SerfsTer6
NR_148667.2:n.4319_4329del
NM_001165963.4:c.3966_3976del MANE Select	NP_001159435.1:p.Arg1322SerfsTer6