Canonical Allele Identifier: CA28968662

Gene: PTPN22 AP4B1-AS1

Linked Data

• dbSNP Id: rs767714802
• gnomAD v2: 1-114356688-A-G
• gnomAD v3: 1-113814066-A-G
• gnomAD v4: 1-113814066-A-G
• MyVariant Identifiers: chr1:g.114356688A>G (hg19) ; chr1:g.113814066A>G (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000001.11:g.113814066A>G , CM000663.2:g.113814066A>G	GRCh38
NC_000001.10:g.114356688A>G , CM000663.1:g.114356688A>G	GRCh37
NC_000001.9:g.114158211A>G	NCBI36
NG_011432.1:g.62688T>C

Transcript Alleles

HGVS	Amino-acid change
ENST00000359785.10:c.*839T>C (PTPN22) MANE Select	ENSP00000352833.5:n.*839T>C
ENST00000359785.9:c.*839T>C (PTPN22)	ENSP00000352833.5:n.*839T>C
ENST00000460620.5:c.*910T>C (PTPN22)	ENSP00000433141.1:n.*910T>C
ENST00000528414.5:c.*839T>C (PTPN22)	ENSP00000435176.1:n.*839T>C
ENST00000538253.5:c.*839T>C (PTPN22)	ENSP00000439372.2:n.*839T>C
NM_001193431.1:c.*839T>C (PTPN22)	NP_001180360.1:n.*839T>C
NM_001193431.2:c.*839T>C (PTPN22)	NP_001180360.1:n.*839T>C
NM_001308297.1:c.*839T>C (PTPN22)	NP_001295226.1:n.*839T>C
NM_012411.4:c.*839T>C (PTPN22)	NP_036543.4:n.*839T>C
NM_012411.5:c.*839T>C (PTPN22)	NP_036543.4:n.*839T>C
NM_015967.5:c.*839T>C (PTPN22)	NP_057051.3:n.*839T>C
NM_015967.6:c.*839T>C (PTPN22)	NP_057051.3:n.*839T>C
NR_125965.1:n.215-321A>G (AP4B1-AS1)
XM_011541221.1:c.*839T>C (PTPN22)	XP_011539523.1:n.*839T>C
XM_011541222.1:c.*910T>C (PTPN22)	XP_011539524.1:n.*910T>C
XM_011541224.1:c.*839T>C (PTPN22)	XP_011539526.1:n.*839T>C
XM_011541225.1:c.*910T>C (PTPN22)	XP_011539527.1:n.*910T>C
XM_011541225.2:c.*910T>C (PTPN22)	XP_011539527.1:n.*910T>C
XM_017001005.2:c.*839T>C (PTPN22)	XP_016856494.1:n.*839T>C
NM_015967.7:c.*839T>C (PTPN22)	NP_057051.3:n.*839T>C
NM_015967.8:c.*839T>C (PTPN22) MANE Select	NP_057051.4:n.*839T>C