Canonical Allele Identifier: CA259679
Gene: SOX2 HGNC NCBI
SOX2-OT HGNC NCBI

Linked Data

ClinVar Variation Id: 29891
ClinVar RCV Id: RCV000022772
dbSNP Id: rs387906688
MyVariant Identifiers: chr3:g.181430393T>A (hg19) chr3:g.181712605T>A (hg38)
PubMed: PMID:20803647
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Genomic Alleles

HGVS Genome Assembly
NC_000003.12:g.181712605T>A , CM000665.2:g.181712605T>A GRCh38
NC_000003.11:g.181430393T>A , CM000665.1:g.181430393T>A GRCh37
NC_000003.10:g.182913087T>A NCBI36
NG_009080.1:g.5672T>A , LRG_719:g.5672T>A

Transcript Alleles

HGVS Amino-acid change
ENST00000325404.3:c.245T>A (SOX2) MANE Select ENSP00000323588.1:p.Leu82Ter
ENST00000325404.2:c.245T>A (SOX2) ENSP00000323588.1:p.Leu82Ter
NM_003106.3:c.245T>A (SOX2) NP_003097.1:p.Leu82Ter
NR_004053.3:n.768-2580T>A (SOX2-OT)
NR_075089.1:n.767+12722T>A (SOX2-OT)
NR_075090.1:n.482-26964T>A (SOX2-OT)
NR_075091.1:n.783-2580T>A (SOX2-OT)
NR_075092.1:n.782+12722T>A (SOX2-OT)
NR_075093.1:n.473-26964T>A (SOX2-OT)
NM_003106.4:c.245T>A (SOX2) MANE Select NP_003097.1:p.Leu82Ter
Search 100 bp 5'
Search 100 bp 3'