WARNING - Protein Allele ID and Protein Sequence HGVS API Requests Temporarily Disabled:
We are investigating the periodic unresponsiveness in the Registry.
Although replication attempts were unsuccessful, there is a high correlation with protein alleles. And with haplotype HGVS queries.
This temporarily affects the API and the UI.
We are investigating the periodic unresponsiveness in the Registry.
Although replication attempts were unsuccessful, there is a high correlation with protein alleles. And with haplotype HGVS queries.
This temporarily affects the API and the UI.
Linked Data
ClinVar Variation Id:
408573
ClinVar RCV Id:
RCV000461004
dbSNP Id:
rs765515813
ExAC:
2:167108280 G / A
gnomAD v2:
2-167108280-G-A
gnomAD v3:
2-166251770-G-A
gnomAD v4:
2-166251770-G-A
Genomic Alleles
| HGVS | Genome Assembly |
|---|---|
| NC_000002.12:g.166251770G>A , CM000664.2:g.166251770G>A | GRCh38 |
| NC_000002.11:g.167108280G>A , CM000664.1:g.167108280G>A | GRCh37 |
| NC_000002.10:g.166816526G>A | NCBI36 |
| NG_012798.1:g.129218C>T , LRG_369:g.129218C>T |
Transcript Alleles
| HGVS | Amino-acid change | |
|---|---|---|
| ENST00000303354.11:c.3467C>T (SCN9A) | ENSP00000304748.7:p.Thr1156Ile | |
| ENST00000409435.6:c.3467C>T (SCN9A) | ENSP00000386330.2:p.Thr1156Ile | |
| ENST00000642356.2:c.3467C>T (SCN9A) MANE Select | ENSP00000495601.1:p.Thr1156Ile | |
| ENST00000643319.1:c.549C>T (SCN9A) | ENSP00000494071.1:n.549C>T | |
| ENST00000644316.1:c.3434C>T (SCN9A) | ENSP00000493939.1:p.Thr1145Ile | |
| ENST00000645907.1:c.3434C>T (SCN9A) | ENSP00000495983.1:p.Thr1145Ile | |
| ENST00000667201.2:c.2092C>T (SCN9A) | ||
| ENST00000303354.10:c.3467C>T (SCN9A) | ENSP00000304748.7:p.Thr1156Ile | |
| ENST00000409435.5:c.3467C>T (SCN9A) | ENSP00000386330.1:p.Thr1156Ile | |
| ENST00000409672.5:c.3434C>T (SCN9A) | ENSP00000386306.1:p.Thr1145Ile | |
| NM_002977.3:c.3434C>T , LRG_369t1:c.3434C>T (SCN9A) | NP_002968.1:p.Thr1145Ile | |
| NR_110260.1:n.736-9G>A (SCN1A-AS1) | ||
| XM_005246757.1:c.3467C>T (SCN9A) | XP_005246814.1:p.Thr1156Ile | |
| XM_011511616.1:c.3467C>T (SCN9A) | XP_011509918.1:p.Thr1156Ile | |
| XM_011511617.1:c.3467C>T (SCN9A) | XP_011509919.1:p.Thr1156Ile | |
| XM_011511618.1:c.3434C>T (SCN9A) | XP_011509920.1:p.Thr1145Ile | |
| XM_011511619.1:c.3467C>T (SCN9A) | XP_011509921.1:p.Thr1156Ile | |
| NM_001365536.1:c.3467C>T (SCN9A) MANE Select | NP_001352465.1:p.Thr1156Ile | |
| XM_011511616.3:c.3467C>T (SCN9A) | XP_011509918.1:p.Thr1156Ile | |
| XM_011511617.2:c.3467C>T (SCN9A) | XP_011509919.1:p.Thr1156Ile | |
| XM_011511618.2:c.3434C>T (SCN9A) | XP_011509920.1:p.Thr1145Ile | |
| XM_011511619.2:c.3467C>T (SCN9A) | XP_011509921.1:p.Thr1156Ile | |
| XM_017004668.1:c.3080C>T (SCN9A) | XP_016860157.1:p.Thr1027Ile | |
| XM_017004669.1:c.2723C>T (SCN9A) | XP_016860158.1:p.Thr908Ile |