Canonical Allele Identifier: CA1139657301
Gene: SCN1A HGNC NCBI

Linked Data

ClinVar Variation Id: 871606
ClinVar RCV Id: RCV001091669
dbSNP Id: rs1692878257

Genomic Alleles

HGVS Genome Assembly
NC_000002.12:g.166013820_166013823del , CM000664.2:g.166013820_166013823del GRCh38
NC_000002.11:g.166870330_166870333del , CM000664.1:g.166870330_166870333del GRCh37
NC_000002.10:g.166578576_166578579del NCBI36
NG_011906.1:g.64818_64821del , LRG_8:g.64818_64821del

Transcript Alleles

HGVS Amino-acid change
ENST00000689288.1:c.*1663_*1666del ENSP00000509637.1:n.*1663_*1666del
ENST00000303395.9:c.3627_3630del ENSP00000303540.4:p.Arg1209SerfsTer5
ENST00000635750.1:c.3594_3597del ENSP00000490799.1:p.Arg1198SerfsTer5
ENST00000635776.1:c.3594_3597del ENSP00000490692.1:p.Arg1198SerfsTer5
ENST00000636194.1:c.*1120_*1123del ENSP00000490288.1:n.*1120_*1123del
ENST00000637038.1:c.425_428del
ENST00000637968.1:n.3879_3882del
ENST00000637988.1:c.3594_3597del ENSP00000490780.1:p.Arg1198SerfsTer5
ENST00000640036.1:c.3594_3597del ENSP00000491573.1:p.Arg1198SerfsTer5
ENST00000641575.1:c.3591_3594del ENSP00000492917.1:p.Arg1197SerfsTer5
ENST00000641603.1:c.3627_3630del ENSP00000492945.1:p.Arg1209SerfsTer5
ENST00000641996.1:c.*3181_*3184del ENSP00000493054.1:n.*3181_*3184del
ENST00000671940.1:c.*1570_*1573del ENSP00000500336.1:n.*1570_*1573del
ENST00000673490.1:n.6100_6103del
ENST00000674923.1:c.3627_3630del MANE Select ENSP00000501589.1:p.Arg1209SerfsTer5
ENST00000303395.8:c.3627_3630del ENSP00000303540.4:p.Arg1209SerfsTer5
ENST00000375405.7:c.3594_3597del ENSP00000364554.3:p.Arg1198SerfsTer5
ENST00000409050.1:c.3543_3546del ENSP00000386312.1:p.Arg1181SerfsTer5
ENST00000423058.6:c.3627_3630del ENSP00000407030.2:p.Arg1209SerfsTer5
NM_001165963.1:c.3627_3630del NP_001159435.1:p.Arg1209SerfsTer5
NM_001165964.1:c.3543_3546del NP_001159436.1:p.Arg1181SerfsTer5
NM_001202435.1:c.3627_3630del NP_001189364.1:p.Arg1209SerfsTer5
NM_006920.4:c.3594_3597del , LRG_8t1:c.3594_3597del NP_008851.3:p.Arg1198SerfsTer5
NR_110598.1:n.176-1793_176-1790del
XM_011511598.1:c.3627_3630del XP_011509900.1:p.Arg1209SerfsTer5
XM_011511599.1:c.3627_3630del XP_011509901.1:p.Arg1209SerfsTer5
XM_011511600.1:c.3627_3630del XP_011509902.1:p.Arg1209SerfsTer5
XM_011511601.1:c.3627_3630del XP_011509903.1:p.Arg1209SerfsTer5
XM_011511602.1:c.3627_3630del XP_011509904.1:p.Arg1209SerfsTer5
XM_011511603.1:c.3624_3627del XP_011509905.1:p.Arg1208SerfsTer5
XM_011511604.1:c.3594_3597del XP_011509906.1:p.Arg1198SerfsTer5
XM_011511605.1:c.3591_3594del XP_011509907.1:p.Arg1197SerfsTer5
XM_011511606.1:c.3543_3546del XP_011509908.1:p.Arg1181SerfsTer5
XM_011511607.1:c.3627_3630del XP_011509909.1:p.Arg1209SerfsTer5
XR_922981.1:n.3811_3814del
NM_001165963.2:c.3627_3630del NP_001159435.1:p.Arg1209SerfsTer5
NM_001165964.2:c.3543_3546del NP_001159436.1:p.Arg1181SerfsTer5
NM_001202435.2:c.3627_3630del NP_001189364.1:p.Arg1209SerfsTer5
NM_001353948.1:c.3627_3630del NP_001340877.1:p.Arg1209SerfsTer5
NM_001353949.1:c.3594_3597del NP_001340878.1:p.Arg1198SerfsTer5
NM_001353950.1:c.3594_3597del NP_001340879.1:p.Arg1198SerfsTer5
NM_001353951.1:c.3594_3597del NP_001340880.1:p.Arg1198SerfsTer5
NM_001353952.1:c.3594_3597del NP_001340881.1:p.Arg1198SerfsTer5
NM_001353954.1:c.3591_3594del NP_001340883.1:p.Arg1197SerfsTer5
NM_001353955.1:c.3591_3594del NP_001340884.1:p.Arg1197SerfsTer5
NM_001353957.1:c.3543_3546del NP_001340886.1:p.Arg1181SerfsTer5
NM_001353958.1:c.3543_3546del NP_001340887.1:p.Arg1181SerfsTer5
NM_001353960.1:c.3540_3543del NP_001340889.1:p.Arg1180SerfsTer5
NM_001353961.1:c.1185_1188del NP_001340890.1:p.Arg395SerfsTer5
NM_006920.5:c.3594_3597del NP_008851.3:p.Arg1198SerfsTer5
NR_148667.1:n.3999_4002del
XR_001738883.1:n.4013_4016del
XR_001738884.1:n.3985_3988del
NM_001165963.3:c.3627_3630del NP_001159435.1:p.Arg1209SerfsTer5
NM_001165964.3:c.3543_3546del NP_001159436.1:p.Arg1181SerfsTer5
NM_001202435.3:c.3627_3630del NP_001189364.1:p.Arg1209SerfsTer5
NM_001353948.2:c.3627_3630del NP_001340877.1:p.Arg1209SerfsTer5
NM_001353949.2:c.3594_3597del NP_001340878.1:p.Arg1198SerfsTer5
NM_001353950.2:c.3594_3597del NP_001340879.1:p.Arg1198SerfsTer5
NM_001353951.2:c.3594_3597del NP_001340880.1:p.Arg1198SerfsTer5
NM_001353952.2:c.3594_3597del NP_001340881.1:p.Arg1198SerfsTer5
NM_001353954.2:c.3591_3594del NP_001340883.1:p.Arg1197SerfsTer5
NM_001353955.2:c.3591_3594del NP_001340884.1:p.Arg1197SerfsTer5
NM_001353957.2:c.3543_3546del NP_001340886.1:p.Arg1181SerfsTer5
NM_001353958.2:c.3543_3546del NP_001340887.1:p.Arg1181SerfsTer5
NM_001353960.2:c.3540_3543del NP_001340889.1:p.Arg1180SerfsTer5
NM_001353961.2:c.1185_1188del NP_001340890.1:p.Arg395SerfsTer5
NM_006920.6:c.3594_3597del NP_008851.3:p.Arg1198SerfsTer5
NR_148667.2:n.3980_3983del
NM_001165963.4:c.3627_3630del MANE Select NP_001159435.1:p.Arg1209SerfsTer5