Canonical Allele Identifier: CA10163327

Gene: HPS4

Linked Data

• ClinVar Variation Id: 2178438
• ClinVar RCV Id: RCV002595536 ; RCV003274255
• dbSNP Id: rs759909785
• ExAC: 22:26860179 G / A
• gnomAD v2: 22-26860179-G-A
• gnomAD v3: 22-26464213-G-A
• gnomAD v4: 22-26464213-G-A
• COSMIC: COSM4691092 ; COSM4691093
• MyVariant Identifiers: chr22:g.26860179G>A (hg19) ; chr22:g.26464213G>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000022.11:g.26464213G>A , CM000684.2:g.26464213G>A	GRCh38
NC_000022.10:g.26860179G>A , CM000684.1:g.26860179G>A	GRCh37
NC_000022.9:g.25190179G>A	NCBI36
NG_009763.2:g.24651C>T , LRG_590:g.24651C>T

Transcript Alleles

HGVS	Amino-acid change
ENST00000422379.3:c.1471C>T	ENSP00000415081.3:p.Arg491Cys
ENST00000473782.2:c.1417C>T	ENSP00000514223.1:p.Arg473Cys
ENST00000483631.2:c.622C>T	ENSP00000514228.1:p.Arg208Cys
ENST00000491142.2:c.1417C>T	ENSP00000514221.1:p.Arg473Cys
ENST00000699226.1:n.4343C>T
ENST00000699227.1:c.*761C>T	ENSP00000514220.1:n.*761C>T
ENST00000699228.1:n.1967C>T
ENST00000699229.1:n.834C>T
ENST00000699230.1:n.2140C>T
ENST00000699231.1:n.4429C>T
ENST00000699232.1:n.2773C>T
ENST00000699233.1:n.1288C>T
ENST00000699234.1:c.*761C>T	ENSP00000514222.1:n.*761C>T
ENST00000699235.1:c.622C>T	ENSP00000514224.1:p.Arg208Cys
ENST00000699236.1:c.*606C>T	ENSP00000514225.1:n.*606C>T
ENST00000699237.1:c.*606C>T	ENSP00000514226.1:n.*606C>T
ENST00000699238.1:c.*960C>T	ENSP00000514227.1:n.*960C>T
ENST00000699239.1:n.4171C>T
ENST00000699240.1:c.*1074C>T	ENSP00000514229.1:n.*1074C>T
ENST00000699241.1:c.*1609C>T	ENSP00000514230.1:n.*1609C>T
ENST00000699242.1:c.1327C>T	ENSP00000514231.1:p.Arg443Cys
ENST00000699243.1:c.*761C>T	ENSP00000514232.1:n.*761C>T
ENST00000699244.1:c.1270C>T	ENSP00000514233.1:p.Arg424Cys
ENST00000699246.1:c.*788C>T	ENSP00000514234.1:n.*788C>T
ENST00000699247.1:c.669+4338C>T	ENSP00000514235.1:n.669+4338C>T
ENST00000699248.1:n.3487C>T
ENST00000699249.1:c.*761C>T	ENSP00000514236.1:n.*761C>T
ENST00000699250.1:c.1417C>T	ENSP00000514237.1:p.Arg473Cys
ENST00000699251.1:c.1417C>T	ENSP00000514238.1:p.Arg473Cys
ENST00000699252.1:n.1967C>T
ENST00000398145.7:c.1417C>T MANE Select	ENSP00000381213.2:p.Arg473Cys
ENST00000336873.9:c.1417C>T	ENSP00000338457.5:p.Arg473Cys
ENST00000398145.6:c.1417C>T	ENSP00000381213.2:p.Arg473Cys
ENST00000402105.7:c.1402C>T	ENSP00000384185.3:p.Arg468Cys
ENST00000429411.5:c.*989C>T	ENSP00000399705.1:n.*989C>T
ENST00000439453.5:c.*935C>T	ENSP00000406764.1:n.*935C>T
ENST00000464362.5:c.*1748C>T	ENSP00000430291.1:n.*1748C>T
ENST00000466781.5:n.4276C>T
ENST00000485842.5:n.404+4338C>T
ENST00000496385.5:n.2183C>T
NM_022081.5:c.1417C>T , LRG_590t1:c.1417C>T	NP_071364.4:p.Arg473Cys
NM_152841.2:c.1402C>T , LRG_590t2:c.1402C>T	NP_690054.1:p.Arg468Cys
NR_073135.1:n.2103C>T
NR_073136.1:n.1865C>T
XM_006724353.2:c.1471C>T	XP_006724416.1:p.Arg491Cys
XM_006724354.2:c.1471C>T	XP_006724417.1:p.Arg491Cys
XM_006724360.2:c.904C>T	XP_006724423.1:p.Arg302Cys
XM_011530485.1:c.1549C>T	XP_011528787.1:p.Arg517Cys
XM_011530486.1:c.1549C>T	XP_011528788.1:p.Arg517Cys
XM_011530487.1:c.1549C>T	XP_011528789.1:p.Arg517Cys
XM_011530488.1:c.1549C>T	XP_011528790.1:p.Arg517Cys
XM_011530489.1:c.1549C>T	XP_011528791.1:p.Arg517Cys
XM_011530490.1:c.1495C>T	XP_011528792.1:p.Arg499Cys
XM_011530491.1:c.1549C>T	XP_011528793.1:p.Arg517Cys
XM_011530492.1:c.1549C>T	XP_011528794.1:p.Arg517Cys
XM_011530493.1:c.1549C>T	XP_011528795.1:p.Arg517Cys
XM_011530494.1:c.757C>T	XP_011528796.1:p.Arg253Cys
XM_011530495.1:c.904C>T	XP_011528797.1:p.Arg302Cys
XM_011530496.1:c.757C>T	XP_011528798.1:p.Arg253Cys
XR_937947.1:n.2208C>T
NM_001349896.1:c.1417C>T	NP_001336825.1:p.Arg473Cys
NM_001349898.1:c.1417C>T	NP_001336827.1:p.Arg473Cys
NM_001349899.1:c.1417C>T	NP_001336828.1:p.Arg473Cys
NM_001349900.1:c.1471C>T	NP_001336829.1:p.Arg491Cys
NM_001349901.1:c.1471C>T	NP_001336830.1:p.Arg491Cys
NM_001349902.1:c.1417C>T	NP_001336831.1:p.Arg473Cys
NM_001349903.1:c.1417C>T	NP_001336832.1:p.Arg473Cys
NM_001349904.1:c.1417C>T	NP_001336833.1:p.Arg473Cys
NM_001349905.1:c.1417C>T	NP_001336834.1:p.Arg473Cys
NR_146311.1:n.2194C>T
NR_146312.1:n.2019C>T
NR_146313.1:n.2039C>T
NR_146314.1:n.2170C>T
NR_146315.1:n.2110C>T
NR_146316.1:n.2085C>T
XM_006724360.3:c.904C>T	XP_006724423.1:p.Arg302Cys
XM_011530485.2:c.1549C>T	XP_011528787.1:p.Arg517Cys
XM_011530486.2:c.1549C>T	XP_011528788.1:p.Arg517Cys
XM_011530487.2:c.1549C>T	XP_011528789.1:p.Arg517Cys
XM_011530488.2:c.1549C>T	XP_011528790.1:p.Arg517Cys
XM_011530489.2:c.1549C>T	XP_011528791.1:p.Arg517Cys
XM_011530490.3:c.1495C>T	XP_011528792.1:p.Arg499Cys
XM_011530491.3:c.1549C>T	XP_011528793.1:p.Arg517Cys
XM_011530492.2:c.1549C>T	XP_011528794.1:p.Arg517Cys
XM_011530493.3:c.1549C>T	XP_011528795.1:p.Arg517Cys
XM_011530494.2:c.757C>T	XP_011528796.1:p.Arg253Cys
XM_011530495.2:c.904C>T	XP_011528797.1:p.Arg302Cys
XM_011530496.2:c.757C>T	XP_011528798.1:p.Arg253Cys
XM_017029045.2:c.1495C>T	XP_016884534.1:p.Arg499Cys
XM_017029046.2:c.1417C>T	XP_016884535.1:p.Arg473Cys
XM_017029047.2:c.1495C>T	XP_016884536.1:p.Arg499Cys
XM_017029052.2:c.1009C>T	XP_016884541.1:p.Arg337Cys
XM_017029053.1:c.994C>T	XP_016884542.1:p.Arg332Cys
XM_017029056.2:c.622C>T	XP_016884545.1:p.Arg208Cys
XM_017029061.2:c.622C>T	XP_016884550.1:p.Arg208Cys
XM_017029062.2:c.622C>T	XP_016884551.1:p.Arg208Cys
XM_017029063.2:c.622C>T	XP_016884552.1:p.Arg208Cys
XM_017029064.2:c.622C>T	XP_016884553.1:p.Arg208Cys
XM_024452298.1:c.790C>T	XP_024308066.1:p.Arg264Cys
XM_024452299.1:c.622C>T	XP_024308067.1:p.Arg208Cys
XM_024452300.1:c.622C>T	XP_024308068.1:p.Arg208Cys
XR_001755361.2:n.2125C>T
XR_001755364.1:n.1981C>T
XR_001755366.2:n.2654C>T
XR_002958721.1:n.2203C>T
XR_937947.2:n.2203C>T
NM_001349898.2:c.1417C>T	NP_001336827.1:p.Arg473Cys
NM_001349899.2:c.1417C>T	NP_001336828.1:p.Arg473Cys
NM_001349900.2:c.1471C>T	NP_001336829.1:p.Arg491Cys
NM_001349903.2:c.1417C>T	NP_001336832.1:p.Arg473Cys
NM_001349904.2:c.1417C>T	NP_001336833.1:p.Arg473Cys
NR_073136.2:n.1672C>T
NR_146311.2:n.2114C>T
NR_146313.2:n.1959C>T
NR_146315.2:n.2030C>T
NM_022081.6:c.1417C>T MANE Select	NP_071364.4:p.Arg473Cys
NR_146316.2:n.2005C>T