Canonical Allele Identifier: CA052531

Gene: PMS2

Linked Data

• ClinVar Variation Id: 215759
• ClinVar RCV Id: RCV000563510 ; RCV000588576 ; RCV001081365 ; RCV001357920 ; RCV003479057
• dbSNP Id: rs530021751
• ExAC: 7:6031657 A / G
• gnomAD v2: 7-6031657-A-G
• gnomAD v3: 7-5992026-A-G
• gnomAD v4: 7-5992026-A-G
• MyVariant Identifiers: chr7:g.6031657A>G (hg19) ; chr7:g.5992026A>G (hg38)
• PubMed: PMID:26976419

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5992026A>G , CM000669.2:g.5992026A>G	GRCh38
NC_000007.13:g.6031657A>G , CM000669.1:g.6031657A>G	GRCh37
NC_000007.12:g.5998183A>G	NCBI36
NG_008466.1:g.22081T>C , LRG_161:g.22081T>C

Transcript Alleles

HGVS	Amino-acid change
ENST00000699814.2:c.*331T>C	ENSP00000514615.2:n.*331T>C
ENST00000699840.2:c.932T>C	ENSP00000514638.2:p.Met311Thr
ENST00000699930.2:c.827T>C	ENSP00000514695.2:p.Met276Thr
ENST00000406569.8:c.935T>C	ENSP00000514464.1:p.Met312Thr
ENST00000644110.2:c.*529T>C	ENSP00000496392.2:n.*529T>C
ENST00000699752.1:c.935T>C	ENSP00000514561.1:p.Met312Thr
ENST00000699753.1:c.*234T>C	ENSP00000514562.1:n.*234T>C
ENST00000699754.1:c.737T>C	ENSP00000514563.1:p.Met246Thr
ENST00000699755.1:c.*334T>C	ENSP00000514564.1:n.*334T>C
ENST00000699756.1:c.*522T>C	ENSP00000514565.1:n.*522T>C
ENST00000699757.1:c.*192T>C	ENSP00000514566.1:n.*192T>C
ENST00000699758.1:c.*192T>C	ENSP00000514567.1:n.*192T>C
ENST00000699759.1:n.1789T>C
ENST00000699760.1:c.617T>C	ENSP00000514568.1:p.Met206Thr
ENST00000699761.1:c.530T>C	ENSP00000514569.1:p.Met177Thr
ENST00000699762.1:c.362T>C	ENSP00000514570.1:p.Met121Thr
ENST00000699763.1:c.530T>C	ENSP00000514571.1:p.Met177Thr
ENST00000699764.1:c.935T>C	ENSP00000514572.1:p.Met312Thr
ENST00000699765.1:c.*31T>C	ENSP00000514573.1:n.*31T>C
ENST00000699766.1:c.935T>C	ENSP00000514574.1:p.Met312Thr
ENST00000699767.1:c.935T>C	ENSP00000514575.1:p.Met312Thr
ENST00000699768.1:c.935T>C	ENSP00000514576.1:p.Met312Thr
ENST00000699811.1:c.530T>C	ENSP00000514614.1:p.Met177Thr
ENST00000699813.1:n.1048T>C
ENST00000699814.1:c.558T>C
ENST00000699815.1:c.*427T>C	ENSP00000514616.1:n.*427T>C
ENST00000699816.1:c.530T>C	ENSP00000514617.1:p.Met177Thr
ENST00000699817.1:c.*529T>C	ENSP00000514618.1:n.*529T>C
ENST00000699818.1:c.530T>C	ENSP00000514619.1:p.Met177Thr
ENST00000699819.1:c.*92T>C	ENSP00000514620.1:n.*92T>C
ENST00000699820.1:c.935T>C	ENSP00000514621.1:p.Met312Thr
ENST00000699821.1:c.530T>C	ENSP00000514622.1:p.Met177Thr
ENST00000699822.1:c.*387T>C	ENSP00000514623.1:n.*387T>C
ENST00000699823.1:c.530T>C	ENSP00000514624.1:p.Met177Thr
ENST00000699824.1:c.*438T>C	ENSP00000514625.1:n.*438T>C
ENST00000699825.1:c.530T>C	ENSP00000514626.1:p.Met177Thr
ENST00000699826.1:c.*334T>C	ENSP00000514627.1:n.*334T>C
ENST00000699827.1:c.767T>C	ENSP00000514628.1:p.Met256Thr
ENST00000699828.1:c.935T>C	ENSP00000514629.1:p.Met312Thr
ENST00000699829.1:c.*436T>C	ENSP00000514630.1:n.*436T>C
ENST00000699830.1:c.*334T>C	ENSP00000514631.1:n.*334T>C
ENST00000699833.1:n.2707T>C
ENST00000699837.1:c.530T>C	ENSP00000514635.1:p.Met177Thr
ENST00000699838.1:c.*835T>C	ENSP00000514636.1:n.*835T>C
ENST00000699839.1:c.1121T>C	ENSP00000514637.1:p.Met374Thr
ENST00000699840.1:c.932T>C	ENSP00000514638.1:p.Met311Thr
ENST00000699916.1:c.*192T>C	ENSP00000514684.1:n.*192T>C
ENST00000699917.1:c.*384T>C	ENSP00000514685.1:n.*384T>C
ENST00000699918.1:c.*436T>C	ENSP00000514686.1:n.*436T>C
ENST00000699919.1:c.*522T>C	ENSP00000514687.1:n.*522T>C
ENST00000699920.1:c.*571T>C	ENSP00000514688.1:n.*571T>C
ENST00000699928.1:c.935T>C	ENSP00000514693.1:p.Met312Thr
ENST00000699929.1:c.*236T>C	ENSP00000514694.1:n.*236T>C
ENST00000699930.1:c.827T>C	ENSP00000514695.1:p.Met276Thr
ENST00000699931.1:n.2363T>C
ENST00000699932.1:c.*31T>C	ENSP00000514696.1:n.*31T>C
ENST00000699933.1:n.915T>C
ENST00000699951.1:c.*31T>C	ENSP00000514706.1:n.*31T>C
ENST00000699952.1:c.803+5300T>C	ENSP00000514707.1:n.803+5300T>C
ENST00000699953.1:c.*42T>C	ENSP00000514708.1:n.*42T>C
ENST00000699954.1:c.*236T>C	ENSP00000514709.1:n.*236T>C
ENST00000265849.12:c.935T>C MANE Select	ENSP00000265849.7:p.Met312Thr
ENST00000642292.1:c.530T>C	ENSP00000495524.1:p.Met177Thr
ENST00000642456.1:c.530T>C	ENSP00000493814.1:p.Met177Thr
ENST00000643595.1:c.*334T>C	ENSP00000494497.1:n.*334T>C
ENST00000644110.1:c.617T>C	ENSP00000496392.1:p.Met206Thr
ENST00000265849.11:c.935T>C	ENSP00000265849.7:p.Met312Thr
ENST00000382321.5:c.803+5300T>C	ENSP00000371758.4:n.803+5300T>C
ENST00000406569.7:n.935T>C
ENST00000441476.6:c.617T>C	ENSP00000392843.2:p.Met206Thr
ENST00000469652.1:n.63-9121T>C
NM_000535.5:c.935T>C , LRG_161t1:c.935T>C	NP_000526.1:p.Met312Thr
NR_003085.2:n.1017T>C
XM_006715742.2:c.929T>C	XP_006715805.1:p.Met310Thr
XM_006715744.2:c.2T>C	XP_006715807.1:p.Met1Thr
XM_011515427.1:c.980T>C	XP_011513729.1:p.Met327Thr
XM_011515428.1:c.980T>C	XP_011513730.1:p.Met327Thr
XM_011515429.1:c.617T>C	XP_011513731.1:p.Met206Thr
XM_011515430.1:c.617T>C	XP_011513732.1:p.Met206Thr
NM_000535.6:c.935T>C	NP_000526.2:p.Met312Thr
NM_001322003.1:c.530T>C	NP_001308932.1:p.Met177Thr
NM_001322004.1:c.530T>C	NP_001308933.1:p.Met177Thr
NM_001322005.1:c.530T>C	NP_001308934.1:p.Met177Thr
NM_001322006.1:c.935T>C	NP_001308935.1:p.Met312Thr
NM_001322007.1:c.617T>C	NP_001308936.1:p.Met206Thr
NM_001322008.1:c.617T>C	NP_001308937.1:p.Met206Thr
NM_001322009.1:c.530T>C	NP_001308938.1:p.Met177Thr
NM_001322010.1:c.530T>C	NP_001308939.1:p.Met177Thr
NM_001322011.1:c.2T>C	NP_001308940.1:p.Met1Thr
NM_001322012.1:c.2T>C	NP_001308941.1:p.Met1Thr
NM_001322013.1:c.362T>C	NP_001308942.1:p.Met121Thr
NM_001322014.1:c.935T>C	NP_001308943.1:p.Met312Thr
NM_001322015.1:c.626T>C	NP_001308944.1:p.Met209Thr
NR_136154.1:n.1022T>C
XM_006715744.4:c.2T>C	XP_006715807.1:p.Met1Thr
XM_017012342.2:c.2T>C	XP_016867831.1:p.Met1Thr
XM_024446800.1:c.530T>C	XP_024302568.1:p.Met177Thr
NM_000535.7:c.935T>C MANE Select	NP_000526.2:p.Met312Thr
NM_001322003.2:c.530T>C	NP_001308932.1:p.Met177Thr
NM_001322004.2:c.530T>C	NP_001308933.1:p.Met177Thr
NM_001322005.2:c.530T>C	NP_001308934.1:p.Met177Thr
NM_001322006.2:c.935T>C	NP_001308935.1:p.Met312Thr
NM_001322008.2:c.617T>C	NP_001308937.1:p.Met206Thr
NM_001322009.2:c.530T>C	NP_001308938.1:p.Met177Thr
NM_001322010.2:c.530T>C	NP_001308939.1:p.Met177Thr
NM_001322011.2:c.2T>C	NP_001308940.1:p.Met1Thr
NM_001322012.2:c.2T>C	NP_001308941.1:p.Met1Thr
NM_001322013.2:c.362T>C	NP_001308942.1:p.Met121Thr
NM_001322014.2:c.935T>C	NP_001308943.1:p.Met312Thr
NM_001322015.2:c.626T>C	NP_001308944.1:p.Met209Thr
NM_001322007.2:c.617T>C	NP_001308936.1:p.Met206Thr