Canonical Allele Identifier: CA010096

Gene: PMS2

Linked Data

• ClinVar Variation Id: 188162
• ClinVar RCV Id: RCV000168056 ; RCV002408726
• dbSNP Id: rs786204115
• MyVariant Identifiers: chr7:g.6026694G>A (hg19) ; chr7:g.5987063G>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000007.14:g.5987063G>A , CM000669.2:g.5987063G>A	GRCh38
NC_000007.13:g.6026694G>A , CM000669.1:g.6026694G>A	GRCh37
NC_000007.12:g.5993220G>A	NCBI36
NG_008466.1:g.27044C>T , LRG_161:g.27044C>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000699814.2:c.*1098C>T	ENSP00000514615.2:n.*1098C>T
ENST00000699840.2:c.1699C>T	ENSP00000514638.2:p.Pro567Ser
ENST00000699930.2:c.1594C>T	ENSP00000514695.2:p.Pro532Ser
ENST00000406569.8:c.1678+24C>T	ENSP00000514464.1:n.1678+24C>T
ENST00000644110.2:c.*1296C>T	ENSP00000496392.2:n.*1296C>T
ENST00000699752.1:c.1546C>T	ENSP00000514561.1:p.Pro516Ser
ENST00000699753.1:c.*1123C>T	ENSP00000514562.1:n.*1123C>T
ENST00000699754.1:c.1504C>T	ENSP00000514563.1:p.Pro502Ser
ENST00000699755.1:c.*1101C>T	ENSP00000514564.1:n.*1101C>T
ENST00000699756.1:c.*1289C>T	ENSP00000514565.1:n.*1289C>T
ENST00000699757.1:c.*959C>T	ENSP00000514566.1:n.*959C>T
ENST00000699758.1:c.*959C>T	ENSP00000514567.1:n.*959C>T
ENST00000699759.1:n.2556C>T
ENST00000699760.1:c.1384C>T	ENSP00000514568.1:p.Pro462Ser
ENST00000699761.1:c.1297C>T	ENSP00000514569.1:p.Pro433Ser
ENST00000699762.1:c.1129C>T	ENSP00000514570.1:p.Pro377Ser
ENST00000699763.1:c.*792C>T	ENSP00000514571.1:n.*792C>T
ENST00000699764.1:c.*20C>T	ENSP00000514572.1:n.*20C>T
ENST00000699765.1:c.*798C>T	ENSP00000514573.1:n.*798C>T
ENST00000699766.1:c.1702C>T	ENSP00000514574.1:p.Pro568Ser
ENST00000699767.1:c.1702C>T	ENSP00000514575.1:p.Pro568Ser
ENST00000699768.1:c.1702C>T	ENSP00000514576.1:p.Pro568Ser
ENST00000699811.1:c.1297C>T	ENSP00000514614.1:p.Pro433Ser
ENST00000699813.1:n.1815C>T
ENST00000699814.1:c.1325C>T
ENST00000699815.1:c.*1233C>T	ENSP00000514616.1:n.*1233C>T
ENST00000699816.1:c.*592C>T	ENSP00000514617.1:n.*592C>T
ENST00000699817.1:c.*1296C>T	ENSP00000514618.1:n.*1296C>T
ENST00000699818.1:c.1297C>T	ENSP00000514619.1:p.Pro433Ser
ENST00000699819.1:c.*859C>T	ENSP00000514620.1:n.*859C>T
ENST00000699820.1:c.1144+2737C>T	ENSP00000514621.1:n.1144+2737C>T
ENST00000699821.1:c.1297C>T	ENSP00000514622.1:p.Pro433Ser
ENST00000699822.1:c.*1154C>T	ENSP00000514623.1:n.*1154C>T
ENST00000699823.1:c.1297C>T	ENSP00000514624.1:p.Pro433Ser
ENST00000699824.1:c.*1205C>T	ENSP00000514625.1:n.*1205C>T
ENST00000699825.1:c.1141C>T	ENSP00000514626.1:p.Pro381Ser
ENST00000699826.1:c.*1101C>T	ENSP00000514627.1:n.*1101C>T
ENST00000699827.1:c.1534C>T	ENSP00000514628.1:p.Pro512Ser
ENST00000699828.1:c.*792C>T	ENSP00000514629.1:n.*792C>T
ENST00000699833.1:n.3474C>T
ENST00000699837.1:c.1297C>T	ENSP00000514635.1:p.Pro433Ser
ENST00000699838.1:c.*1602C>T	ENSP00000514636.1:n.*1602C>T
ENST00000699839.1:c.1888C>T	ENSP00000514637.1:p.Pro630Ser
ENST00000699916.1:c.*959C>T	ENSP00000514684.1:n.*959C>T
ENST00000699917.1:c.*1151C>T	ENSP00000514685.1:n.*1151C>T
ENST00000699918.1:c.*1203C>T	ENSP00000514686.1:n.*1203C>T
ENST00000699919.1:c.*1289C>T	ENSP00000514687.1:n.*1289C>T
ENST00000699920.1:c.*1338C>T	ENSP00000514688.1:n.*1338C>T
ENST00000699928.1:c.989-4072C>T	ENSP00000514693.1:n.989-4072C>T
ENST00000699929.1:c.*1003C>T	ENSP00000514694.1:n.*1003C>T
ENST00000699930.1:c.1594C>T	ENSP00000514695.1:p.Pro532Ser
ENST00000699931.1:n.3130C>T
ENST00000699951.1:c.*798C>T	ENSP00000514706.1:n.*798C>T
ENST00000699952.1:c.803+10263C>T	ENSP00000514707.1:n.803+10263C>T
ENST00000699953.1:c.*809C>T	ENSP00000514708.1:n.*809C>T
ENST00000699954.1:c.*1003C>T	ENSP00000514709.1:n.*1003C>T
ENST00000265849.12:c.1702C>T MANE Select	ENSP00000265849.7:p.Pro568Ser
ENST00000642292.1:c.1297C>T	ENSP00000495524.1:p.Pro433Ser
ENST00000642456.1:c.1297C>T	ENSP00000493814.1:p.Pro433Ser
ENST00000643595.1:c.*1101C>T	ENSP00000494497.1:n.*1101C>T
ENST00000644110.1:c.1384C>T	ENSP00000496392.1:p.Pro462Ser
ENST00000265849.11:c.1702C>T	ENSP00000265849.7:p.Pro568Ser
ENST00000382321.5:c.804-4072C>T	ENSP00000371758.4:n.804-4072C>T
ENST00000406569.7:n.1678+24C>T
ENST00000441476.6:c.1384C>T	ENSP00000392843.2:p.Pro462Ser
ENST00000469652.1:n.63-4158C>T
NM_000535.5:c.1702C>T , LRG_161t1:c.1702C>T	NP_000526.1:p.Pro568Ser
NR_003085.2:n.1784C>T
XM_006715742.2:c.1696C>T	XP_006715805.1:p.Pro566Ser
XM_006715744.2:c.769C>T	XP_006715807.1:p.Pro257Ser
XM_011515427.1:c.1747C>T	XP_011513729.1:p.Pro583Ser
XM_011515428.1:c.1591C>T	XP_011513730.1:p.Pro531Ser
XM_011515429.1:c.1384C>T	XP_011513731.1:p.Pro462Ser
XM_011515430.1:c.1384C>T	XP_011513732.1:p.Pro462Ser
NM_000535.6:c.1702C>T	NP_000526.2:p.Pro568Ser
NM_001322003.1:c.1297C>T	NP_001308932.1:p.Pro433Ser
NM_001322004.1:c.1297C>T	NP_001308933.1:p.Pro433Ser
NM_001322005.1:c.1297C>T	NP_001308934.1:p.Pro433Ser
NM_001322006.1:c.1546C>T	NP_001308935.1:p.Pro516Ser
NM_001322007.1:c.1384C>T	NP_001308936.1:p.Pro462Ser
NM_001322008.1:c.1384C>T	NP_001308937.1:p.Pro462Ser
NM_001322009.1:c.1297C>T	NP_001308938.1:p.Pro433Ser
NM_001322010.1:c.1141C>T	NP_001308939.1:p.Pro381Ser
NM_001322011.1:c.769C>T	NP_001308940.1:p.Pro257Ser
NM_001322012.1:c.769C>T	NP_001308941.1:p.Pro257Ser
NM_001322013.1:c.1129C>T	NP_001308942.1:p.Pro377Ser
NM_001322014.1:c.1702C>T	NP_001308943.1:p.Pro568Ser
NM_001322015.1:c.1393C>T	NP_001308944.1:p.Pro465Ser
NR_136154.1:n.1789C>T
XM_006715744.4:c.769C>T	XP_006715807.1:p.Pro257Ser
XM_017012342.2:c.769C>T	XP_016867831.1:p.Pro257Ser
XM_024446800.1:c.1141C>T	XP_024302568.1:p.Pro381Ser
NM_000535.7:c.1702C>T MANE Select	NP_000526.2:p.Pro568Ser
NM_001322003.2:c.1297C>T	NP_001308932.1:p.Pro433Ser
NM_001322004.2:c.1297C>T	NP_001308933.1:p.Pro433Ser
NM_001322005.2:c.1297C>T	NP_001308934.1:p.Pro433Ser
NM_001322006.2:c.1546C>T	NP_001308935.1:p.Pro516Ser
NM_001322008.2:c.1384C>T	NP_001308937.1:p.Pro462Ser
NM_001322009.2:c.1297C>T	NP_001308938.1:p.Pro433Ser
NM_001322010.2:c.1141C>T	NP_001308939.1:p.Pro381Ser
NM_001322011.2:c.769C>T	NP_001308940.1:p.Pro257Ser
NM_001322012.2:c.769C>T	NP_001308941.1:p.Pro257Ser
NM_001322013.2:c.1129C>T	NP_001308942.1:p.Pro377Ser
NM_001322014.2:c.1702C>T	NP_001308943.1:p.Pro568Ser
NM_001322015.2:c.1393C>T	NP_001308944.1:p.Pro465Ser
NM_001322007.2:c.1384C>T	NP_001308936.1:p.Pro462Ser