UPDATE - Protein Allele ID & Protein Sequence HGVS Requests Partially Restored
Protein allele requests are no longer disabled.
Currently, hypothetical explanatory transcript generation is not part of the response and is being investigated.
Protein allele requests are no longer disabled.
Currently, hypothetical explanatory transcript generation is not part of the response and is being investigated.
Linked Data
ClinVar Variation Id:
183724
dbSNP Id:
rs587782281
gnomAD v3:
2-47796012-AT-A
gnomAD v4:
2-47796012-AT-A
MyVariant Identifiers:
chr2:g.48023153del (hg19)
chr2:g.48023152del (hg19)
chr2:g.47796014del (hg38)
chr2:g.47796013del (hg38)
PubMed:
PMID:24763289
Genomic Alleles
| HGVS | Genome Assembly |
|---|---|
| NC_000002.12:g.47796014del , CM000664.2:g.47796014del | GRCh38 |
| NC_000002.11:g.48023153del , CM000664.1:g.48023153del | GRCh37 |
| NC_000002.10:g.47876657del | NCBI36 |
| NG_007111.1:g.17868del , LRG_219:g.17868del |
Transcript Alleles
| HGVS | Amino-acid change | |
|---|---|---|
| ENST00000411819.2:c.281del (MSH6) | ENSP00000406248.2:p.Leu94TrpfsTer18 | |
| ENST00000420813.6:c.281del (MSH6) | ENSP00000390382.2:p.Leu94TrpfsTer18 | |
| ENST00000455383.6:c.281del (MSH6) | ENSP00000397484.2:p.Leu94TrpfsTer18 | |
| ENST00000700004.2:c.578del (MSH6) | ENSP00000514752.2:p.Leu193TrpfsTer18 | |
| ENST00000699999.1:n.662del (MSH6) | ||
| ENST00000700000.1:c.578del (MSH6) | ENSP00000514749.1:p.Leu193TrpfsTer18 | |
| ENST00000700001.1:n.650del (MSH6) | ||
| ENST00000700002.1:c.578del (MSH6) | ENSP00000514750.1:p.Leu193TrpfsTer25 | |
| ENST00000700003.1:c.578del (MSH6) | ENSP00000514751.1:p.Leu193TrpfsTer24 | |
| ENST00000234420.11:c.578del (MSH6) MANE Select | ENSP00000234420.5:p.Leu193TrpfsTer18 | |
| ENST00000540021.6:c.238-2597del (MSH6) | ENSP00000446475.1:n.238-2597del | |
| ENST00000652107.1:c.281del (MSH6) | ENSP00000498629.1:p.Leu94TrpfsTer18 | |
| ENST00000673637.1:c.281del (MSH6) | ENSP00000501310.1:p.Leu94TrpfsTer18 | |
| ENST00000673922.1:n.350-2597del (MSH6) | ||
| ENST00000234420.9:c.578del (MSH6) | ENSP00000234420.4:p.Leu193TrpfsTer18 | |
| ENST00000405808.5:c.170-6573del (FBXO11) | ENSP00000385127.1:n.170-6573del | |
| ENST00000411819.1:c.281del (MSH6) | ENSP00000406248.1:p.Leu94TrpfsTer18 | |
| ENST00000420813.5:c.281del (MSH6) | ENSP00000390382.1:p.Leu94TrpfsTer? | |
| ENST00000434234.5:c.*125-6573del (FBXO11) | ENSP00000402692.1:n.*125-6573del | |
| ENST00000445503.5:c.458-2597del (MSH6) | ENSP00000405294.1:n.458-2597del | |
| ENST00000455383.5:c.281del (MSH6) | ENSP00000397484.1:p.Leu94TrpfsTer18 | |
| ENST00000456246.1:c.*66del (MSH6) | ENSP00000410570.1:n.*66del | |
| ENST00000538136.1:c.-325del (MSH6) | ENSP00000438580.1:n.-325del | |
| ENST00000540021.5:c.238-2597del (MSH6) | ENSP00000446475.1:n.238-2597del | |
| ENST00000614496.4:c.-279-2597del (MSH6) | ENSP00000477844.1:n.-279-2597del | |
| ENST00000616033.4:c.575del (MSH6) | ENSP00000480261.1:p.Leu192TrpfsTer18 | |
| ENST00000622629.4:c.-2519del (MSH6) | ENSP00000482078.1:n.-2519del | |
| NM_000179.2:c.578del , LRG_219t1:c.578del (MSH6) | NP_000170.1:p.Leu193TrpfsTer18 | |
| NM_001281492.1:c.238-2597del (MSH6) | NP_001268421.1:n.238-2597del | |
| NM_001281493.1:c.-279-2597del (MSH6) | NP_001268422.1:n.-279-2597del | |
| NM_001281494.1:c.-325del (MSH6) | NP_001268423.1:n.-325del | |
| XM_005264271.1:c.281del (MSH6) | XP_005264328.1:p.Leu94TrpfsTer18 | |
| XM_011532798.1:c.395del (MSH6) | XP_011531100.1:p.Leu132TrpfsTer18 | |
| XM_011532799.1:c.281del (MSH6) | XP_011531101.1:p.Leu94TrpfsTer18 | |
| XM_011532800.1:c.281del (MSH6) | XP_011531102.1:p.Leu94TrpfsTer18 | |
| XM_024452819.1:c.578del (MSH6) | XP_024308587.1:p.Leu193TrpfsTer18 | |
| XM_024452820.1:c.395del (MSH6) | XP_024308588.1:p.Leu132TrpfsTer18 | |
| XM_024452821.1:c.281del (MSH6) | XP_024308589.1:p.Leu94TrpfsTer18 | |
| XM_024452822.1:c.-279-2597del (MSH6) | XP_024308590.1:n.-279-2597del | |
| NM_000179.3:c.578del (MSH6) MANE Select | NP_000170.1:p.Leu193TrpfsTer18 | |
| NM_001281492.2:c.238-2597del (MSH6) | NP_001268421.1:n.238-2597del | |
| NM_001281493.2:c.-279-2597del (MSH6) | NP_001268422.1:n.-279-2597del | |
| NM_001281494.2:c.-325del (MSH6) | NP_001268423.1:n.-325del |