Canonical Allele Identifier: CA116857
Gene: CTNS HGNC NCBI

Linked Data

ClinVar Variation Id: 4447
dbSNP Id: rs35086888
gnomAD v2: 17-3550800-G-A
gnomAD v3: 17-3647506-G-A
gnomAD v4: 17-3647506-G-A

Genomic Alleles

HGVS Genome Assembly
NC_000017.11:g.3647506G>A , CM000679.2:g.3647506G>A GRCh38
NC_000017.10:g.3550800G>A , CM000679.1:g.3550800G>A GRCh37
NC_000017.9:g.3497549G>A NCBI36
NG_012489.1:g.16039G>A
NG_012489.2:g.16039G>A

Transcript Alleles

HGVS Amino-acid change
ENST00000046640.9:c.124G>A MANE Select ENSP00000046640.4:p.Val42Ile
ENST00000381870.8:c.124G>A ENSP00000371294.3:p.Val42Ile
ENST00000399306.7:c.124G>A ENSP00000382245.2:p.Val42Ile
ENST00000488623.6:c.-604G>A ENSP00000501016.1:n.-604G>A
ENST00000574776.6:c.-113+7239G>A ENSP00000461118.2:n.-113+7239G>A
ENST00000673669.1:c.-233G>A ENSP00000501123.1:n.-233G>A
ENST00000673965.1:c.124G>A ENSP00000500995.1:p.Val42Ile
ENST00000046640.7:c.124G>A ENSP00000046640.3:p.Val42Ile
ENST00000381870.7:c.124G>A ENSP00000371294.3:p.Val42Ile
ENST00000399306.6:c.124G>A ENSP00000382245.2:p.Val42Ile
ENST00000452111.5:c.124G>A ENSP00000408652.1:p.Val42Ile
ENST00000467663.5:c.124G>A ENSP00000461056.1:p.Val42Ile
ENST00000488623.5:n.345G>A
ENST00000495445.5:n.438G>A
ENST00000574218.1:c.-216-7492G>A ENSP00000458912.1:n.-216-7492G>A
ENST00000574776.5:c.-113+7239G>A ENSP00000461118.1:n.-113+7239G>A
ENST00000576979.1:c.124G>A ENSP00000458457.1:p.Val42Ile
NM_001031681.2:c.124G>A NP_001026851.2:p.Val42Ile
NM_004937.2:c.124G>A NP_004928.2:p.Val42Ile
XM_005256485.1:c.124G>A XP_005256542.1:p.Val42Ile
XM_006721463.1:c.124G>A XP_006721526.1:p.Val42Ile
XM_006721464.1:c.-233G>A XP_006721527.1:n.-233G>A
XM_011523691.1:c.124G>A XP_011521993.1:p.Val42Ile
XM_011523692.1:c.-318G>A XP_011521994.1:n.-318G>A
XR_934003.1:n.717G>A
XR_934164.1:n.431-2331C>T
XM_005256485.3:c.124G>A XP_005256542.1:p.Val42Ile
XM_006721463.3:c.124G>A XP_006721526.1:p.Val42Ile
XM_006721464.2:c.-233G>A XP_006721527.1:n.-233G>A
XM_011523691.2:c.124G>A XP_011521993.1:p.Val42Ile
XM_011523692.2:c.-318G>A XP_011521994.1:n.-318G>A
XM_017024254.1:c.-217+7239G>A XP_016879743.1:n.-217+7239G>A
XM_017024255.1:c.-233G>A XP_016879744.1:n.-233G>A
XM_017024256.1:c.-318G>A XP_016879745.1:n.-318G>A
XM_017024257.1:c.-217+7239G>A XP_016879746.1:n.-217+7239G>A
XM_017024258.1:c.-233G>A XP_016879747.1:n.-233G>A
XR_001752758.1:n.453-2331C>T
XR_001752759.1:n.325-2331C>T
XR_001752760.1:n.453-2331C>T
XR_001752761.2:n.452+2658C>T
XR_002958115.1:n.140-2331C>T
XR_934164.2:n.453-2331C>T
NM_001374492.1:c.124G>A NP_001361421.1:p.Val42Ile
NM_001374493.1:c.-233G>A NP_001361422.1:n.-233G>A
NM_001374494.1:c.-318G>A NP_001361423.1:n.-318G>A
NM_001374495.1:c.-217+7239G>A NP_001361424.1:n.-217+7239G>A
NM_001374496.1:c.-233G>A NP_001361425.1:n.-233G>A
NM_004937.3:c.124G>A MANE Select NP_004928.2:p.Val42Ile
NM_001031681.3:c.124G>A NP_001026851.2:p.Val42Ile