Canonical Allele Identifier: CA123921
Gene: LHCGR HGNC NCBI
STON1-GTF2A1L HGNC NCBI
GTF2A1L HGNC NCBI

Linked Data

ClinVar Variation Id: 14392
dbSNP Id: rs121912524
gnomAD v2: 2-48915276-G-A
gnomAD v3: 2-48688137-G-A
gnomAD v4: 2-48688137-G-A
COSMIC: COSM95625

Genomic Alleles

HGVS Genome Assembly
NC_000002.12:g.48688137G>A , CM000664.2:g.48688137G>A GRCh38
NC_000002.11:g.48915276G>A , CM000664.1:g.48915276G>A GRCh37
NC_000002.10:g.48768780G>A NCBI36
NG_008193.1:g.72605C>T
NG_033050.1:g.163213G>A
NG_008193.2:g.72605C>T
NG_033050.2:g.163213G>A

Transcript Alleles

HGVS Amino-acid change
ENST00000294954.12:c.1660C>T (LHCGR) MANE Select ENSP00000294954.6:p.Arg554Ter
ENST00000294954.11:c.1660C>T (LHCGR) ENSP00000294954.6:p.Arg554Ter
ENST00000401907.5:c.950C>T (LHCGR) ENSP00000385406.1:p.Ser317Leu
ENST00000402114.6:c.3441+16457G>A (STON1-GTF2A1L) ENSP00000385701.1:n.3441+16457G>A
ENST00000403273.5:c.*404C>T (LHCGR) ENSP00000385847.1:n.*404C>T
ENST00000405626.5:c.1579C>T (LHCGR) ENSP00000386033.1:p.Arg527Ter
ENST00000508440.1:c.276+16457G>A (GTF2A1L) ENSP00000421474.1:n.276+16457G>A
ENST00000602369.3:c.*220+6087C>T ENSP00000473498.1:n.*220+6087C>T
NM_000233.3:c.1660C>T (LHCGR) NP_000224.2:p.Arg554Ter
NM_001198593.1:c.3441+16457G>A (STON1-GTF2A1L) NP_001185522.1:n.3441+16457G>A
XM_005264309.2:c.703C>T (LHCGR) XP_005264366.1:p.Arg235Ter
XM_006712015.2:c.730C>T (LHCGR) XP_006712078.1:p.Arg244Ter
XM_011532828.1:c.1585C>T (LHCGR) XP_011531130.1:p.Arg529Ter
XM_011532829.1:c.1399C>T (LHCGR) XP_011531131.1:p.Arg467Ter
XM_011532830.1:c.1318C>T (LHCGR) XP_011531132.1:p.Arg440Ter
XM_011532831.1:c.1024C>T (LHCGR) XP_011531133.1:p.Arg342Ter
XM_011532832.1:c.730C>T (LHCGR) XP_011531134.1:p.Arg244Ter
XM_011532833.1:c.730C>T (LHCGR) XP_011531135.1:p.Arg244Ter
XM_011532834.1:c.703C>T (LHCGR) XP_011531136.1:p.Arg235Ter
XM_005264309.3:c.703C>T (LHCGR) XP_005264366.1:p.Arg235Ter
XM_006712015.3:c.730C>T (LHCGR) XP_006712078.1:p.Arg244Ter
XM_011532834.2:c.703C>T (LHCGR) XP_011531136.1:p.Arg235Ter
XM_017004089.1:c.1405C>T (LHCGR) XP_016859578.1:p.Arg469Ter
XM_017004090.1:c.1024C>T (LHCGR) XP_016859579.1:p.Arg342Ter
NM_000233.4:c.1660C>T (LHCGR) MANE Select NP_000224.2:p.Arg554Ter
NM_001198593.2:c.3441+16457G>A (STON1-GTF2A1L) NP_001185522.1:n.3441+16457G>A