Canonical Allele Identifier: CA263674

Gene: CLN3

Linked Data

• ClinVar Variation Id: 56271
• ClinVar RCV Id: RCV000049683 ; RCV001853042
• dbSNP Id: rs386833722
• MyVariant Identifiers: chr16:g.28497972C>T (hg19) ; chr16:g.28486651C>T (hg38)
• PubMed: PMID:21990111

Genomic Alleles

HGVS	Genome Assembly
NC_000016.10:g.28486651C>T , CM000678.2:g.28486651C>T	GRCh38
NC_000016.9:g.28497972C>T , CM000678.1:g.28497972C>T	GRCh37
NC_000016.8:g.28405473C>T	NCBI36
NG_008654.2:g.10652G>A , LRG_689:g.10652G>A

Transcript Alleles

HGVS	Amino-acid Change
ENST00000333496.14:c.389-1G>A	ENSP00000329171.9:n.389-1G>A
ENST00000355477.10:c.461-1G>A	ENSP00000347660.7:n.461-1G>A
ENST00000357857.14:c.299-1G>A	ENSP00000350523.9:n.299-1G>A
ENST00000359984.12:c.461-1G>A	ENSP00000353073.9:n.461-1G>A
ENST00000360019.8:c.389-1G>A	ENSP00000353116.3:n.389-1G>A
ENST00000395653.9:c.218+805G>A	ENSP00000379014.5:n.218+805G>A
ENST00000561505.2:c.147-1G>A	ENSP00000457615.2:n.147-1G>A
ENST00000561689.6:n.746-1G>A
ENST00000565316.6:c.461-1G>A	ENSP00000456117.1:n.461-1G>A
ENST00000565778.6:c.308+805G>A	ENSP00000458015.1:n.308+805G>A
ENST00000566083.6:n.919-1G>A
ENST00000566824.6:n.441-1G>A
ENST00000567495.6:c.461-161G>A	ENSP00000456013.2:n.461-161G>A
ENST00000567963.6:c.299-1G>A	ENSP00000455387.2:n.299-1G>A
ENST00000568076.6:n.588-1G>A
ENST00000568422.6:c.460+805G>A	ENSP00000455549.2:n.460+805G>A
ENST00000568443.2:c.614-1G>A	ENSP00000454899.2:n.614-1G>A
ENST00000568452.6:n.564-1G>A
ENST00000568472.6:n.553+805G>A
ENST00000568497.6:c.-292-2533G>A	ENSP00000456414.2:n.-292-2533G>A
ENST00000568558.6:c.380+805G>A	ENSP00000455603.2:n.380+805G>A
ENST00000569430.7:c.461-1G>A	ENSP00000454229.1:n.461-1G>A
ENST00000628023.3:c.223-2533G>A	ENSP00000486178.1:n.223-2533G>A
ENST00000635861.1:c.219-1G>A	ENSP00000490034.1:n.219-1G>A
ENST00000635887.1:c.461-1G>A	ENSP00000490709.1:n.461-1G>A
ENST00000635958.1:n.572-1G>A
ENST00000635973.1:c.212-1G>A	ENSP00000490363.1:n.212-1G>A
ENST00000636017.1:c.381-1G>A	ENSP00000490538.1:n.381-1G>A
ENST00000636078.1:n.503-1G>A
ENST00000636147.2:c.461-1G>A MANE Select	ENSP00000490105.1:n.461-1G>A
ENST00000636172.1:c.381-1G>A	ENSP00000490505.1:n.381-1G>A
ENST00000636228.1:c.299-1G>A	ENSP00000489627.1:n.299-1G>A
ENST00000636351.1:n.181-1G>A
ENST00000636503.1:c.461-1G>A	ENSP00000489824.1:n.461-1G>A
ENST00000636766.1:c.461-1G>A	ENSP00000489841.1:n.461-1G>A
ENST00000636839.1:n.613-1G>A
ENST00000636853.1:n.1341G>A
ENST00000636866.1:c.461-1G>A	ENSP00000490880.1:n.461-1G>A
ENST00000636977.1:n.1529-1G>A
ENST00000637100.1:c.461-1G>A	ENSP00000490394.1:n.461-1G>A
ENST00000637107.1:c.534-1G>A	ENSP00000490248.1:n.534-1G>A
ENST00000637184.1:c.461-1G>A	ENSP00000489952.1:n.461-1G>A
ENST00000637299.1:c.*270-1G>A	ENSP00000489823.1:n.*270-1G>A
ENST00000637376.1:c.461-1G>A	ENSP00000490758.1:n.461-1G>A
ENST00000637578.1:c.219-1G>A	ENSP00000490206.1:n.219-1G>A
ENST00000637699.1:c.460+805G>A	ENSP00000490049.1:n.460+805G>A
ENST00000637871.1:c.381-1G>A	ENSP00000490670.1:n.381-1G>A
ENST00000637985.1:c.*400-1G>A	ENSP00000490932.1:n.*400-1G>A
ENST00000333496.13:c.389-1G>A	ENSP00000329171.9:n.389-1G>A
ENST00000355477.9:c.460+805G>A	ENSP00000347660.6:n.460+805G>A
ENST00000357806.11:c.380+805G>A	ENSP00000350457.7:n.380+805G>A
ENST00000357857.13:c.299-1G>A	ENSP00000350523.9:n.299-1G>A
ENST00000359984.11:c.299-1G>A	ENSP00000353073.8:n.299-1G>A
ENST00000360019.6:c.461-1G>A	ENSP00000353116.2:n.461-1G>A
ENST00000395653.8:c.161-1G>A	ENSP00000379014.4:n.161-1G>A
ENST00000561505.1:c.161-1G>A	ENSP00000457615.1:n.161-1G>A
ENST00000561689.5:n.302-1G>A
ENST00000563874.5:n.1815-1G>A
ENST00000564574.5:n.509-1G>A
ENST00000565047.1:n.271+805G>A
ENST00000565140.5:c.460+805G>A	ENSP00000455342.1:n.460+805G>A
ENST00000565316.5:c.461-1G>A	ENSP00000456117.1:n.461-1G>A
ENST00000565688.5:c.212-1G>A	ENSP00000456122.1:n.212-1G>A
ENST00000565778.5:c.308+805G>A	ENSP00000458015.1:n.308+805G>A
ENST00000566057.5:c.291+805G>A	ENSP00000456693.1:n.291+805G>A
ENST00000566083.5:n.692-1G>A
ENST00000566824.5:n.510-1G>A
ENST00000567495.5:c.460+805G>A	ENSP00000456013.1:n.460+805G>A
ENST00000567963.5:c.461-1G>A	ENSP00000455387.1:n.461-1G>A
ENST00000568076.5:n.460+805G>A
ENST00000568224.4:c.227-1G>A	ENSP00000454253.1:n.227-1G>A
ENST00000568422.5:c.241-1G>A	ENSP00000455549.1:n.241-1G>A
ENST00000568452.5:n.461-1G>A
ENST00000568472.5:n.158-2533G>A
ENST00000568497.5:c.223-2533G>A	ENSP00000456414.1:n.223-2533G>A
ENST00000568558.5:c.218+805G>A	ENSP00000455603.1:n.218+805G>A
ENST00000569030.5:c.460+805G>A	ENSP00000454680.1:n.460+805G>A
ENST00000569430.5:c.461-1G>A	ENSP00000454229.1:n.461-1G>A
ENST00000628023.2:c.223-2533G>A	ENSP00000486178.1:n.223-2533G>A
ENST00000631023.2:c.461-1G>A	ENSP00000486616.1:n.461-1G>A
NM_000086.2:c.461-1G>A , LRG_689t1:c.461-1G>A	NP_000077.1:n.461-1G>A
NM_001042432.1:c.461-1G>A , LRG_689t2:c.461-1G>A	NP_001035897.1:n.461-1G>A
NM_001286104.1:c.389-1G>A	NP_001273033.1:n.389-1G>A
NM_001286105.1:c.161-1G>A	NP_001273034.1:n.161-1G>A
NM_001286109.1:c.227-1G>A	NP_001273038.1:n.227-1G>A
NM_001286110.1:c.299-1G>A	NP_001273039.1:n.299-1G>A
NM_001042432.2:c.461-1G>A MANE Select	NP_001035897.1:n.461-1G>A
NM_001286104.2:c.389-1G>A	NP_001273033.1:n.389-1G>A
NM_001286105.2:c.161-1G>A	NP_001273034.1:n.161-1G>A
NM_001286109.2:c.227-1G>A	NP_001273038.1:n.227-1G>A
NM_001286110.2:c.299-1G>A	NP_001273039.1:n.299-1G>A