Canonical Allele Identifier: CA231497
Gene: SCN9A HGNC NCBI
SCN1A-AS1 HGNC NCBI

Linked Data

ClinVar Variation Id: 130260
dbSNP Id: rs199692186

Genomic Alleles

HGVS Genome Assembly
NC_000002.12:g.166272748T>C , CM000664.2:g.166272748T>C GRCh38
NC_000002.11:g.167129258T>C , CM000664.1:g.167129258T>C GRCh37
NC_000002.10:g.166837504T>C NCBI36
NG_012798.1:g.108240A>G , LRG_369:g.108240A>G

Transcript Alleles

HGVS Amino-acid Change
ENST00000303354.11:c.3002A>G (SCN9A) ENSP00000304748.7:p.Tyr1001Cys
ENST00000409435.6:c.3002A>G (SCN9A) ENSP00000386330.2:p.Tyr1001Cys
ENST00000642356.2:c.3002A>G (SCN9A) MANE Select ENSP00000495601.1:p.Tyr1001Cys
ENST00000643319.1:c.2A>G (SCN9A) ENSP00000494071.1:p.Tyr1Cys
ENST00000644316.1:c.2969A>G (SCN9A) ENSP00000493939.1:p.Tyr990Cys
ENST00000645907.1:c.2969A>G (SCN9A) ENSP00000495983.1:p.Tyr990Cys
ENST00000667201.2:c.1877-250A>G (SCN9A)
ENST00000303354.10:c.3002A>G (SCN9A) ENSP00000304748.7:p.Tyr1001Cys
ENST00000409435.5:c.3002A>G (SCN9A) ENSP00000386330.1:p.Tyr1001Cys
ENST00000409672.5:c.2969A>G (SCN9A) ENSP00000386306.1:p.Tyr990Cys
NM_002977.3:c.2969A>G , LRG_369t1:c.2969A>G (SCN9A) NP_002968.1:p.Tyr990Cys
NR_110260.1:n.870-4340T>C (SCN1A-AS1)
XM_005246757.1:c.3002A>G (SCN9A) XP_005246814.1:p.Tyr1001Cys
XM_011511616.1:c.3002A>G (SCN9A) XP_011509918.1:p.Tyr1001Cys
XM_011511617.1:c.3002A>G (SCN9A) XP_011509919.1:p.Tyr1001Cys
XM_011511618.1:c.2969A>G (SCN9A) XP_011509920.1:p.Tyr990Cys
XM_011511619.1:c.3002A>G (SCN9A) XP_011509921.1:p.Tyr1001Cys
NM_001365536.1:c.3002A>G (SCN9A) MANE Select NP_001352465.1:p.Tyr1001Cys
XM_011511616.3:c.3002A>G (SCN9A) XP_011509918.1:p.Tyr1001Cys
XM_011511617.2:c.3002A>G (SCN9A) XP_011509919.1:p.Tyr1001Cys
XM_011511618.2:c.2969A>G (SCN9A) XP_011509920.1:p.Tyr990Cys
XM_011511619.2:c.3002A>G (SCN9A) XP_011509921.1:p.Tyr1001Cys
XM_017004668.1:c.2615A>G (SCN9A) XP_016860157.1:p.Tyr872Cys
XM_017004669.1:c.2258A>G (SCN9A) XP_016860158.1:p.Tyr753Cys