Canonical Allele Identifier: CA411024002

Gene: HPS4

Linked Data

• MyVariant Identifiers: chr22:g.26853894A>C (hg19) ; chr22:g.26457928A>C (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000022.11:g.26457928A>C , CM000684.2:g.26457928A>C	GRCh38
NC_000022.10:g.26853894A>C , CM000684.1:g.26853894A>C	GRCh37
NC_000022.9:g.25183894A>C	NCBI36
NG_009763.2:g.30936T>G , LRG_590:g.30936T>G

Transcript Alleles

HGVS	Amino-acid Change
ENST00000422379.3:c.1940T>G	ENSP00000415081.3:p.Phe647Cys
ENST00000473782.2:c.1886T>G	ENSP00000514223.1:p.Phe629Cys
ENST00000483631.2:c.1091T>G	ENSP00000514228.1:p.Phe364Cys
ENST00000491142.2:c.1886T>G	ENSP00000514221.1:p.Phe629Cys
ENST00000699226.1:n.4812T>G
ENST00000699227.1:c.*1230T>G	ENSP00000514220.1:n.*1230T>G
ENST00000699228.1:n.2436T>G
ENST00000699229.1:n.1303T>G
ENST00000699230.1:n.2609T>G
ENST00000699231.1:n.4898T>G
ENST00000699232.1:n.3242T>G
ENST00000699233.1:n.1757T>G
ENST00000699234.1:c.*1230T>G	ENSP00000514222.1:n.*1230T>G
ENST00000699235.1:c.1091T>G	ENSP00000514224.1:p.Phe364Cys
ENST00000699236.1:c.*1075T>G	ENSP00000514225.1:n.*1075T>G
ENST00000699237.1:c.*1075T>G	ENSP00000514226.1:n.*1075T>G
ENST00000699238.1:c.*1429T>G	ENSP00000514227.1:n.*1429T>G
ENST00000699239.1:n.4640T>G
ENST00000699240.1:c.*1543T>G	ENSP00000514229.1:n.*1543T>G
ENST00000699241.1:c.*2078T>G	ENSP00000514230.1:n.*2078T>G
ENST00000699242.1:c.1796T>G	ENSP00000514231.1:p.Phe599Cys
ENST00000699243.1:c.*1230T>G	ENSP00000514232.1:n.*1230T>G
ENST00000699244.1:c.1739T>G	ENSP00000514233.1:p.Phe580Cys
ENST00000699245.1:n.1178T>G
ENST00000699246.1:c.*1257T>G	ENSP00000514234.1:n.*1257T>G
ENST00000699247.1:c.842T>G	ENSP00000514235.1:p.Phe281Cys
ENST00000699248.1:n.3784-4524T>G
ENST00000699249.1:c.*1058-4524T>G	ENSP00000514236.1:n.*1058-4524T>G
ENST00000699250.1:c.1714-4524T>G	ENSP00000514237.1:n.1714-4524T>G
ENST00000699251.1:c.1886T>G	ENSP00000514238.1:p.Phe629Cys
ENST00000699252.1:n.2436T>G
ENST00000398145.7:c.1886T>G MANE Select	ENSP00000381213.2:p.Phe629Cys
ENST00000336873.9:c.1886T>G	ENSP00000338457.5:p.Phe629Cys
ENST00000398145.6:c.1886T>G	ENSP00000381213.2:p.Phe629Cys
ENST00000402105.7:c.1871T>G	ENSP00000384185.3:p.Phe624Cys
ENST00000429411.5:c.*1458T>G	ENSP00000399705.1:n.*1458T>G
ENST00000439453.5:c.*1404T>G	ENSP00000406764.1:n.*1404T>G
ENST00000464362.5:c.*2217T>G	ENSP00000430291.1:n.*2217T>G
ENST00000466781.5:n.4745T>G
ENST00000485842.5:n.577T>G
ENST00000493455.6:n.449T>G
ENST00000496385.5:n.2480-4524T>G
ENST00000519774.5:n.272T>G
NM_022081.5:c.1886T>G , LRG_590t1:c.1886T>G	NP_071364.4:p.Phe629Cys
NM_152841.2:c.1871T>G , LRG_590t2:c.1871T>G	NP_690054.1:p.Phe624Cys
NR_073135.1:n.2572T>G
NR_073136.1:n.2334T>G
XM_006724353.2:c.1940T>G	XP_006724416.1:p.Phe647Cys
XM_006724354.2:c.1940T>G	XP_006724417.1:p.Phe647Cys
XM_006724360.2:c.1373T>G	XP_006724423.1:p.Phe458Cys
XM_011530485.1:c.2018T>G	XP_011528787.1:p.Phe673Cys
XM_011530486.1:c.2018T>G	XP_011528788.1:p.Phe673Cys
XM_011530487.1:c.2018T>G	XP_011528789.1:p.Phe673Cys
XM_011530488.1:c.2018T>G	XP_011528790.1:p.Phe673Cys
XM_011530489.1:c.2018T>G	XP_011528791.1:p.Phe673Cys
XM_011530490.1:c.1964T>G	XP_011528792.1:p.Phe655Cys
XM_011530491.1:c.2018T>G	XP_011528793.1:p.Phe673Cys
XM_011530492.1:c.2018T>G	XP_011528794.1:p.Phe673Cys
XM_011530493.1:c.1846-4524T>G	XP_011528795.1:n.1846-4524T>G
XM_011530494.1:c.1226T>G	XP_011528796.1:p.Phe409Cys
XM_011530495.1:c.1373T>G	XP_011528797.1:p.Phe458Cys
XM_011530496.1:c.1226T>G	XP_011528798.1:p.Phe409Cys
XR_937947.1:n.2677T>G
NM_001349896.1:c.1886T>G	NP_001336825.1:p.Phe629Cys
NM_001349898.1:c.1886T>G	NP_001336827.1:p.Phe629Cys
NM_001349899.1:c.1886T>G	NP_001336828.1:p.Phe629Cys
NM_001349900.1:c.1940T>G	NP_001336829.1:p.Phe647Cys
NM_001349901.1:c.1940T>G	NP_001336830.1:p.Phe647Cys
NM_001349902.1:c.1714-4524T>G	NP_001336831.1:n.1714-4524T>G
NM_001349903.1:c.1714-4524T>G	NP_001336832.1:n.1714-4524T>G
NM_001349904.1:c.1886T>G	NP_001336833.1:p.Phe629Cys
NM_001349905.1:c.1886T>G	NP_001336834.1:p.Phe629Cys
NR_146311.1:n.2663T>G
NR_146312.1:n.2488T>G
NR_146313.1:n.2508T>G
NR_146314.1:n.2639T>G
NR_146315.1:n.2579T>G
NR_146316.1:n.2554T>G
XM_006724360.3:c.1373T>G	XP_006724423.1:p.Phe458Cys
XM_011530485.2:c.2018T>G	XP_011528787.1:p.Phe673Cys
XM_011530486.2:c.2018T>G	XP_011528788.1:p.Phe673Cys
XM_011530487.2:c.2018T>G	XP_011528789.1:p.Phe673Cys
XM_011530488.2:c.2018T>G	XP_011528790.1:p.Phe673Cys
XM_011530489.2:c.2018T>G	XP_011528791.1:p.Phe673Cys
XM_011530490.3:c.1964T>G	XP_011528792.1:p.Phe655Cys
XM_011530491.3:c.2018T>G	XP_011528793.1:p.Phe673Cys
XM_011530492.2:c.2018T>G	XP_011528794.1:p.Phe673Cys
XM_011530493.3:c.1846-4524T>G	XP_011528795.1:n.1846-4524T>G
XM_011530494.2:c.1226T>G	XP_011528796.1:p.Phe409Cys
XM_011530495.2:c.1373T>G	XP_011528797.1:p.Phe458Cys
XM_011530496.2:c.1226T>G	XP_011528798.1:p.Phe409Cys
XM_017029045.2:c.1964T>G	XP_016884534.1:p.Phe655Cys
XM_017029046.2:c.1886T>G	XP_016884535.1:p.Phe629Cys
XM_017029047.2:c.1792-4524T>G	XP_016884536.1:n.1792-4524T>G
XM_017029052.2:c.1478T>G	XP_016884541.1:p.Phe493Cys
XM_017029053.1:c.1463T>G	XP_016884542.1:p.Phe488Cys
XM_017029056.2:c.1091T>G	XP_016884545.1:p.Phe364Cys
XM_017029061.2:c.1091T>G	XP_016884550.1:p.Phe364Cys
XM_017029062.2:c.1091T>G	XP_016884551.1:p.Phe364Cys
XM_017029063.2:c.1091T>G	XP_016884552.1:p.Phe364Cys
XM_017029064.2:c.1091T>G	XP_016884553.1:p.Phe364Cys
XM_024452298.1:c.1259T>G	XP_024308066.1:p.Phe420Cys
XM_024452299.1:c.1091T>G	XP_024308067.1:p.Phe364Cys
XM_024452300.1:c.1091T>G	XP_024308068.1:p.Phe364Cys
XR_001755361.2:n.2594T>G
XR_001755364.1:n.2278-4524T>G
XR_001755366.2:n.3123T>G
XR_002958721.1:n.2500-4524T>G
XR_937947.2:n.2672T>G
NM_001349898.2:c.1886T>G	NP_001336827.1:p.Phe629Cys
NM_001349899.2:c.1886T>G	NP_001336828.1:p.Phe629Cys
NM_001349900.2:c.1940T>G	NP_001336829.1:p.Phe647Cys
NM_001349903.2:c.1714-4524T>G	NP_001336832.1:n.1714-4524T>G
NM_001349904.2:c.1886T>G	NP_001336833.1:p.Phe629Cys
NR_073136.2:n.2141T>G
NR_146311.2:n.2583T>G
NR_146313.2:n.2428T>G
NR_146315.2:n.2499T>G
NM_022081.6:c.1886T>G MANE Select	NP_071364.4:p.Phe629Cys
NR_146316.2:n.2474T>G