Canonical Allele Identifier: CA10163328

Gene: HPS4

Linked Data

• dbSNP Id: rs764860798
• ExAC: 22:26860182 G / A
• gnomAD v2: 22-26860182-G-A
• gnomAD v3: 22-26464216-G-A
• gnomAD v4: 22-26464216-G-A
• MyVariant Identifiers: chr22:g.26860182G>A (hg19) ; chr22:g.26464216G>A (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000022.11:g.26464216G>A , CM000684.2:g.26464216G>A	GRCh38
NC_000022.10:g.26860182G>A , CM000684.1:g.26860182G>A	GRCh37
NC_000022.9:g.25190182G>A	NCBI36
NG_009763.2:g.24648C>T , LRG_590:g.24648C>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000422379.3:c.1468C>T	ENSP00000415081.3:p.Pro490Ser
ENST00000473782.2:c.1414C>T	ENSP00000514223.1:p.Pro472Ser
ENST00000483631.2:c.619C>T	ENSP00000514228.1:p.Pro207Ser
ENST00000491142.2:c.1414C>T	ENSP00000514221.1:p.Pro472Ser
ENST00000699226.1:n.4340C>T
ENST00000699227.1:c.*758C>T	ENSP00000514220.1:n.*758C>T
ENST00000699228.1:n.1964C>T
ENST00000699229.1:n.831C>T
ENST00000699230.1:n.2137C>T
ENST00000699231.1:n.4426C>T
ENST00000699232.1:n.2770C>T
ENST00000699233.1:n.1285C>T
ENST00000699234.1:c.*758C>T	ENSP00000514222.1:n.*758C>T
ENST00000699235.1:c.619C>T	ENSP00000514224.1:p.Pro207Ser
ENST00000699236.1:c.*603C>T	ENSP00000514225.1:n.*603C>T
ENST00000699237.1:c.*603C>T	ENSP00000514226.1:n.*603C>T
ENST00000699238.1:c.*957C>T	ENSP00000514227.1:n.*957C>T
ENST00000699239.1:n.4168C>T
ENST00000699240.1:c.*1071C>T	ENSP00000514229.1:n.*1071C>T
ENST00000699241.1:c.*1606C>T	ENSP00000514230.1:n.*1606C>T
ENST00000699242.1:c.1324C>T	ENSP00000514231.1:p.Pro442Ser
ENST00000699243.1:c.*758C>T	ENSP00000514232.1:n.*758C>T
ENST00000699244.1:c.1267C>T	ENSP00000514233.1:p.Pro423Ser
ENST00000699246.1:c.*785C>T	ENSP00000514234.1:n.*785C>T
ENST00000699247.1:c.669+4335C>T	ENSP00000514235.1:n.669+4335C>T
ENST00000699248.1:n.3484C>T
ENST00000699249.1:c.*758C>T	ENSP00000514236.1:n.*758C>T
ENST00000699250.1:c.1414C>T	ENSP00000514237.1:p.Pro472Ser
ENST00000699251.1:c.1414C>T	ENSP00000514238.1:p.Pro472Ser
ENST00000699252.1:n.1964C>T
ENST00000398145.7:c.1414C>T MANE Select	ENSP00000381213.2:p.Pro472Ser
ENST00000336873.9:c.1414C>T	ENSP00000338457.5:p.Pro472Ser
ENST00000398145.6:c.1414C>T	ENSP00000381213.2:p.Pro472Ser
ENST00000402105.7:c.1399C>T	ENSP00000384185.3:p.Pro467Ser
ENST00000429411.5:c.*986C>T	ENSP00000399705.1:n.*986C>T
ENST00000439453.5:c.*932C>T	ENSP00000406764.1:n.*932C>T
ENST00000464362.5:c.*1745C>T	ENSP00000430291.1:n.*1745C>T
ENST00000466781.5:n.4273C>T
ENST00000485842.5:n.404+4335C>T
ENST00000496385.5:n.2180C>T
NM_022081.5:c.1414C>T , LRG_590t1:c.1414C>T	NP_071364.4:p.Pro472Ser
NM_152841.2:c.1399C>T , LRG_590t2:c.1399C>T	NP_690054.1:p.Pro467Ser
NR_073135.1:n.2100C>T
NR_073136.1:n.1862C>T
XM_006724353.2:c.1468C>T	XP_006724416.1:p.Pro490Ser
XM_006724354.2:c.1468C>T	XP_006724417.1:p.Pro490Ser
XM_006724360.2:c.901C>T	XP_006724423.1:p.Pro301Ser
XM_011530485.1:c.1546C>T	XP_011528787.1:p.Pro516Ser
XM_011530486.1:c.1546C>T	XP_011528788.1:p.Pro516Ser
XM_011530487.1:c.1546C>T	XP_011528789.1:p.Pro516Ser
XM_011530488.1:c.1546C>T	XP_011528790.1:p.Pro516Ser
XM_011530489.1:c.1546C>T	XP_011528791.1:p.Pro516Ser
XM_011530490.1:c.1492C>T	XP_011528792.1:p.Pro498Ser
XM_011530491.1:c.1546C>T	XP_011528793.1:p.Pro516Ser
XM_011530492.1:c.1546C>T	XP_011528794.1:p.Pro516Ser
XM_011530493.1:c.1546C>T	XP_011528795.1:p.Pro516Ser
XM_011530494.1:c.754C>T	XP_011528796.1:p.Pro252Ser
XM_011530495.1:c.901C>T	XP_011528797.1:p.Pro301Ser
XM_011530496.1:c.754C>T	XP_011528798.1:p.Pro252Ser
XR_937947.1:n.2205C>T
NM_001349896.1:c.1414C>T	NP_001336825.1:p.Pro472Ser
NM_001349898.1:c.1414C>T	NP_001336827.1:p.Pro472Ser
NM_001349899.1:c.1414C>T	NP_001336828.1:p.Pro472Ser
NM_001349900.1:c.1468C>T	NP_001336829.1:p.Pro490Ser
NM_001349901.1:c.1468C>T	NP_001336830.1:p.Pro490Ser
NM_001349902.1:c.1414C>T	NP_001336831.1:p.Pro472Ser
NM_001349903.1:c.1414C>T	NP_001336832.1:p.Pro472Ser
NM_001349904.1:c.1414C>T	NP_001336833.1:p.Pro472Ser
NM_001349905.1:c.1414C>T	NP_001336834.1:p.Pro472Ser
NR_146311.1:n.2191C>T
NR_146312.1:n.2016C>T
NR_146313.1:n.2036C>T
NR_146314.1:n.2167C>T
NR_146315.1:n.2107C>T
NR_146316.1:n.2082C>T
XM_006724360.3:c.901C>T	XP_006724423.1:p.Pro301Ser
XM_011530485.2:c.1546C>T	XP_011528787.1:p.Pro516Ser
XM_011530486.2:c.1546C>T	XP_011528788.1:p.Pro516Ser
XM_011530487.2:c.1546C>T	XP_011528789.1:p.Pro516Ser
XM_011530488.2:c.1546C>T	XP_011528790.1:p.Pro516Ser
XM_011530489.2:c.1546C>T	XP_011528791.1:p.Pro516Ser
XM_011530490.3:c.1492C>T	XP_011528792.1:p.Pro498Ser
XM_011530491.3:c.1546C>T	XP_011528793.1:p.Pro516Ser
XM_011530492.2:c.1546C>T	XP_011528794.1:p.Pro516Ser
XM_011530493.3:c.1546C>T	XP_011528795.1:p.Pro516Ser
XM_011530494.2:c.754C>T	XP_011528796.1:p.Pro252Ser
XM_011530495.2:c.901C>T	XP_011528797.1:p.Pro301Ser
XM_011530496.2:c.754C>T	XP_011528798.1:p.Pro252Ser
XM_017029045.2:c.1492C>T	XP_016884534.1:p.Pro498Ser
XM_017029046.2:c.1414C>T	XP_016884535.1:p.Pro472Ser
XM_017029047.2:c.1492C>T	XP_016884536.1:p.Pro498Ser
XM_017029052.2:c.1006C>T	XP_016884541.1:p.Pro336Ser
XM_017029053.1:c.991C>T	XP_016884542.1:p.Pro331Ser
XM_017029056.2:c.619C>T	XP_016884545.1:p.Pro207Ser
XM_017029061.2:c.619C>T	XP_016884550.1:p.Pro207Ser
XM_017029062.2:c.619C>T	XP_016884551.1:p.Pro207Ser
XM_017029063.2:c.619C>T	XP_016884552.1:p.Pro207Ser
XM_017029064.2:c.619C>T	XP_016884553.1:p.Pro207Ser
XM_024452298.1:c.787C>T	XP_024308066.1:p.Pro263Ser
XM_024452299.1:c.619C>T	XP_024308067.1:p.Pro207Ser
XM_024452300.1:c.619C>T	XP_024308068.1:p.Pro207Ser
XR_001755361.2:n.2122C>T
XR_001755364.1:n.1978C>T
XR_001755366.2:n.2651C>T
XR_002958721.1:n.2200C>T
XR_937947.2:n.2200C>T
NM_001349898.2:c.1414C>T	NP_001336827.1:p.Pro472Ser
NM_001349899.2:c.1414C>T	NP_001336828.1:p.Pro472Ser
NM_001349900.2:c.1468C>T	NP_001336829.1:p.Pro490Ser
NM_001349903.2:c.1414C>T	NP_001336832.1:p.Pro472Ser
NM_001349904.2:c.1414C>T	NP_001336833.1:p.Pro472Ser
NR_073136.2:n.1669C>T
NR_146311.2:n.2111C>T
NR_146313.2:n.1956C>T
NR_146315.2:n.2027C>T
NM_022081.6:c.1414C>T MANE Select	NP_071364.4:p.Pro472Ser
NR_146316.2:n.2002C>T