Canonical Allele Identifier: CA029624

Gene: MSH2

Linked Data

• ClinVar Variation Id: 231884
• ClinVar RCV Id: RCV000222303 ; RCV000708826 ; RCV000813496 ; RCV003469045
• dbSNP Id: rs755931648
• ExAC: 2:47630487 G / T
• gnomAD v2: 2-47630487-G-T
• gnomAD v3: 2-47403348-G-T
• gnomAD v4: 2-47403348-G-T
• MyVariant Identifiers: chr2:g.47630487G>T (hg19) ; chr2:g.47403348G>T (hg38)

Genomic Alleles

HGVS	Genome Assembly
NC_000002.12:g.47403348G>T , CM000664.2:g.47403348G>T	GRCh38
NC_000002.11:g.47630487G>T , CM000664.1:g.47630487G>T	GRCh37
NC_000002.10:g.47483991G>T	NCBI36
NG_007110.2:g.5225G>T , LRG_218:g.5225G>T

Transcript Alleles

HGVS	Amino-acid Change
ENST00000644900.2:c.157G>T	ENSP00000495641.2:p.Ala53Ser
ENST00000233146.7:c.157G>T MANE Select	ENSP00000233146.2:p.Ala53Ser
ENST00000543555.6:c.-30-12G>T	ENSP00000442697.1:n.-30-12G>T
ENST00000644092.1:c.157G>T	ENSP00000496351.1:p.Ala53Ser
ENST00000645339.1:c.157G>T	ENSP00000496441.1:p.Ala53Ser
ENST00000645506.1:c.157G>T	ENSP00000495455.1:p.Ala53Ser
ENST00000646415.1:c.157G>T	ENSP00000495543.1:p.Ala53Ser
ENST00000233146.6:c.157G>T	ENSP00000233146.2:p.Ala53Ser
ENST00000406134.5:c.157G>T	ENSP00000384199.1:p.Ala53Ser
ENST00000454849.5:c.-30-12G>T	ENSP00000411482.1:n.-30-12G>T
ENST00000543555.5:c.-30-12G>T	ENSP00000442697.1:n.-30-12G>T
ENST00000610696.4:c.157G>T	ENSP00000483159.1:p.Ala53Ser
ENST00000613514.4:c.157G>T	ENSP00000484137.1:p.Ala53Ser
ENST00000617333.3:c.157G>T	ENSP00000482468.1:p.Ala53Ser
ENST00000617938.4:c.157G>T	ENSP00000481158.1:p.Ala53Ser
ENST00000621359.2:c.157G>T	ENSP00000481416.1:p.Ala53Ser
NM_000251.2:c.157G>T , LRG_218t1:c.157G>T	NP_000242.1:p.Ala53Ser
NM_001258281.1:c.-30-12G>T	NP_001245210.1:n.-30-12G>T
XM_005264332.2:c.157G>T	XP_005264389.2:p.Ala53Ser
XM_011532867.1:c.157G>T	XP_011531169.1:p.Ala53Ser
XR_939685.1:n.229G>T
XM_005264332.4:c.157G>T	XP_005264389.2:p.Ala53Ser
XM_011532867.2:c.157G>T	XP_011531169.1:p.Ala53Ser
XR_001738747.2:n.219G>T
XR_939685.2:n.219G>T
NM_000251.3:c.157G>T MANE Select	NP_000242.1:p.Ala53Ser