{ "@context": "http://reg.genome.network/schema/allele.jsonld", "@id": "http://reg.genome.network/allele/CA7910293", "communityStandardTitle": [ "NM_005236.3(ERCC4):c.856C>T (p.Gln286Ter)" ], "externalRecords": { "ClinVarAlleles": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=3086652[alleleid]", "alleleId": 3086652, "preferredName": "NM_005236.3(ERCC4):c.856C>T (p.Gln286Ter)" } ], "ClinVarVariations": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/2927079", "RCV": [ "RCV003781269" ], "variationId": 2927079 } ], "ExAC": [ { "@id": "http://exac.broadinstitute.org/variant/16-14024630-C-T", "id": "16-14024630-C-T", "variant": "16:14024630 C / T" } ], "MyVariantInfo_hg19": [ { "@id": "http://myvariant.info/v1/variant/chr16:g.14024630C>T?assembly=hg19", "id": "chr16:g.14024630C>T" } ], "MyVariantInfo_hg38": [ { "@id": "http://myvariant.info/v1/variant/chr16:g.13930773C>T?assembly=hg38", "id": "chr16:g.13930773C>T" } ], "dbSNP": [ { "@id": "http://www.ncbi.nlm.nih.gov/snp/750971687", "rs": 750971687 } ], "gnomAD_2": [ { "@id": "http://gnomad.broadinstitute.org/variant/16-14024630-C-T?dataset=gnomad_r2_1", "id": "16-14024630-C-T", "variant": "16:14024630 C / T" } ], "gnomAD_4": [ { "@id": "http://gnomad.broadinstitute.org/variant/16-13930773-C-T?dataset=gnomad_r4", "id": "16-13930773-C-T", "variant": "16:13930773 C / T" } ] }, "genomicAlleles": [ { "chromosome": "16", "coordinates": [ { "allele": "T", "end": 13930773, "referenceAllele": "C", "start": 13930772 } ], "hgvs": [ "NC_000016.10:g.13930773C>T", "CM000678.2:g.13930773C>T" ], "referenceGenome": "GRCh38", "referenceSequence": "http://reg.genome.network/refseq/RS000064" }, { "chromosome": "16", "coordinates": [ { "allele": "T", "end": 14024630, "referenceAllele": "C", "start": 14024629 } ], "hgvs": [ "NC_000016.9:g.14024630C>T", "CM000678.1:g.14024630C>T" ], "referenceGenome": "GRCh37", "referenceSequence": "http://reg.genome.network/refseq/RS000040" }, { "chromosome": "16", "coordinates": [ { "allele": "T", "end": 13932131, "referenceAllele": "C", "start": 13932130 } ], "hgvs": [ "NC_000016.8:g.13932131C>T" ], "referenceGenome": "NCBI36", "referenceSequence": "http://reg.genome.network/refseq/RS000016" }, { "coordinates": [ { "allele": "T", "end": 15617, "referenceAllele": "C", "start": 15616 } ], "hgvs": [ "NG_011442.1:g.15617C>T", "LRG_463:g.15617C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS001720" } ], "transcriptAlleles": [ { "coordinates": [ { "allele": "T", "end": 844, "referenceAllele": "C", "start": 843 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000682552.1:n.844C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS827542" }, { "coordinates": [ { "allele": "T", "end": 934, "referenceAllele": "C", "start": 933 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000682568.1:n.934C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS827558" }, { "coordinates": [ { "allele": "T", "end": 1022, "referenceAllele": "C", "start": 1021 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000682617.1:c.994C>T" ], "proteinEffect": { "hgvs": "ENSP00000507912.1:p.Gln332Ter", "hgvsWellDefined": "ENSP00000507912.1:p.Gln332_Lys962delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS827606" }, { "coordinates": [ { "allele": "T", "end": 1013, "referenceAllele": "C", "start": 1012 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000682826.1:c.*170C>T" ], "proteinEffect": { "hgvs": "ENSP00000507274.1:n.*170C>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS827814" }, { "coordinates": [ { "allele": "T", "end": 2896, "referenceAllele": "C", "start": 2895 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000682909.1:n.2896C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS827897" }, { "coordinates": [ { "allele": "T", "end": 2501, "referenceAllele": "C", "start": 2500 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000683277.1:n.2501C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS828258" }, { "coordinates": [ { "allele": "T", "end": 864, "referenceAllele": "C", "start": 863 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000683407.1:n.864C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS828384" }, { "coordinates": [ { "allele": "T", "end": 976, "referenceAllele": "C", "start": 975 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000683962.1:c.*550C>T" ], "proteinEffect": { "hgvs": "ENSP00000506854.1:n.*550C>T" }, "referenceSequence": "http://reg.genome.network/refseq/RS828925" }, { "coordinates": [ { "allele": "T", "end": 868, "referenceAllele": "C", "start": 867 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000311895.8:c.856C>T" ], "proteinEffect": { "hgvs": "ENSP00000310520.7:p.Gln286Ter", "hgvsWellDefined": "ENSP00000310520.7:p.Gln286_Lys916delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS745755", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000311895.8:c.856C>T" }, "RefSeq": { "hgvs": "NM_005236.3:c.856C>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000310520.7:p.Gln286Ter" }, "RefSeq": { "hgvs": "NP_005227.1:p.Gln286Ter" } } } }, { "coordinates": [ { "allele": "T", "end": 865, "referenceAllele": "C", "start": 864 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000311895.7:c.856C>T" ], "proteinEffect": { "hgvs": "ENSP00000310520.7:p.Gln286Ter", "hgvsWellDefined": "ENSP00000310520.7:p.Gln286_Lys916delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS256598" }, { "coordinates": [ { "allele": "T", "end": 383, "referenceAllele": "C", "start": 382 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000574194.1:c.383C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS383583" }, { "coordinates": [ { "allele": "T", "end": 533, "referenceAllele": "C", "start": 532 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000574781.1:n.533C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS383827" }, { "coordinates": [ { "allele": "T", "end": 865, "referenceAllele": "C", "start": 864 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "ENST00000575156.5:c.856C>T" ], "proteinEffect": { "hgvs": "ENSP00000459933.1:p.Gln286Ter", "hgvsWellDefined": "ENSP00000459933.1:p.Gln286_Gly372delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGlyIleLeuTrpGlyTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS383997" }, { "@id": "http://reg.genome.network/allele/PA2741919478", "coordinates": [ { "allele": "T", "end": 865, "referenceAllele": "C", "start": 864 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "NM_005236.2:c.856C>T", "LRG_463t1:c.856C>T" ], "proteinEffect": { "hgvs": "NP_005227.1:p.Gln286Ter", "hgvsWellDefined": "NP_005227.1:p.Gln286_Lys916delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS030348" }, { "coordinates": [ { "allele": "T", "end": 1015, "referenceAllele": "C", "start": 1014 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "XM_011522424.1:c.994C>T" ], "proteinEffect": { "hgvs": "XP_011520726.1:p.Gln332Ter", "hgvsWellDefined": "XP_011520726.1:p.Gln332_Lys962delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS089576" }, { "coordinates": [ { "allele": "T", "end": 1548, "referenceAllele": "C", "start": 1547 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "XM_011522425.1:c.313C>T" ], "proteinEffect": { "hgvs": "XP_011520727.1:p.Gln105Ter", "hgvsWellDefined": "XP_011520727.1:p.Gln105_Lys735delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS089577" }, { "coordinates": [ { "allele": "T", "end": 164, "referenceAllele": "C", "start": 163 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "XM_011522426.1:c.67C>T" ], "proteinEffect": { "hgvs": "XP_011520728.1:p.Gln23Ter", "hgvsWellDefined": "XP_011520728.1:p.Gln23_Lys653delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS089578" }, { "coordinates": [ { "allele": "T", "end": 1015, "referenceAllele": "C", "start": 1014 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "XR_932805.1:n.1015C>T" ], "referenceSequence": "http://reg.genome.network/refseq/RS128721" }, { "coordinates": [ { "allele": "T", "end": 1023, "referenceAllele": "C", "start": 1022 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "XM_011522424.3:c.994C>T" ], "proteinEffect": { "hgvs": "XP_011520726.1:p.Gln332Ter", "hgvsWellDefined": "XP_011520726.1:p.Gln332_Lys962delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS546577" }, { "coordinates": [ { "allele": "T", "end": 987, "referenceAllele": "C", "start": 986 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "XM_017023043.2:c.67C>T" ], "proteinEffect": { "hgvs": "XP_016878532.1:p.Gln23Ter", "hgvsWellDefined": "XP_016878532.1:p.Gln23_Lys653delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS573869" }, { "@id": "http://reg.genome.network/allele/PA2741919478", "coordinates": [ { "allele": "T", "end": 868, "referenceAllele": "C", "start": 867 } ], "gene": "http://reg.genome.network/gene/GN003436", "geneNCBI_id": 2072, "geneSymbol": "ERCC4", "hgvs": [ "NM_005236.3:c.856C>T" ], "proteinEffect": { "hgvs": "NP_005227.1:p.Gln286Ter", "hgvsWellDefined": "NP_005227.1:p.Gln286_Lys916delinsAspLeuLysIleLeuArgThrLeuLeuGlnTyrLeuSerGlnTyrAspCysValThrPheLeuAsnLeuLeuGluSerLeuArgAlaThrGluLysAlaPheGlyGlnAsnSerGlyTrpLeuPheLeuAspSerSerThrSerMetPheIleAsnAlaArgAlaArgValTyrHisLeuProAspAlaLysMetSerLysLysGluLysIleSerGluLysMetGluIleLysGluGlyGluGluThrLysLysGluLeuValLeuGluSerAsnProLysTrpGluAlaLeuThrGluValLeuLysGluIleGluAlaGluAsnLysGluSerGluAlaLeuGlyGlyProGlyGlnValLeuIleCysAlaSerAspAspArgThrCysSerGlnLeuArgAspTyrIleThrLeuGlyAlaGluAlaPheLeuLeuArgLeuTyrArgLysThrPheGluLysAspSerLysAlaGluGluValTrpMetLysPheArgLysGluAspSerSerLysArgIleArgLysSerHisLysArgProLysAspProGlnAsnLysGluArgAlaSerThrLysGluArgThrLeuLysLysLysLysArgLysLeuThrLeuThrGlnMetValGlyLysProGluGluLeuGluGluGluGlyAspValGluGluGlyTyrArgArgGluIleSerSerSerProGluSerCysProGluGluIleLysHisGluGluPheAspValAsnLeuSerSerAspAlaAlaPheGlyIleLeuLysGluProLeuThrIleIleHisProLeuLeuGlyCysSerAspProTyrAlaLeuThrArgValLeuHisGluValGluProArgTyrValValLeuTyrAspAlaGluLeuThrPheValArgGlnLeuGluIleTyrArgAlaSerArgProGlyLysProLeuArgValTyrPheLeuIleTyrGlyGlySerThrGluGluGlnArgTyrLeuThrAlaLeuArgLysGluLysGluAlaPheGluLysLeuIleArgGluLysAlaSerMetValValProGluGluArgGluGlyArgAspGluThrAsnLeuAspLeuValArgGlyThrAlaSerAlaAspValSerThrAspThrArgLysAlaGlyGlyGlnGluGlnAsnGlyThrGlnGlnSerIleValValAspMetArgGluPheArgSerGluLeuProSerLeuIleHisArgArgGlyIleAspIleGluProValThrLeuGluValGlyAspTyrIleLeuThrProGluMetCysValGluArgLysSerIleSerAspLeuIleGlySerLeuAsnAsnGlyArgLeuTyrSerGlnCysIleSerMetSerArgTyrTyrLysArgProValLeuLeuIleGluPheAspProSerLysProPheSerLeuThrSerArgGlyAlaLeuPheGlnGluIleSerSerAsnAspIleSerSerLysLeuThrLeuLeuThrLeuHisPheProArgLeuArgIleLeuTrpCysProSerProHisAlaThrAlaGluLeuPheGluGluLeuLysGlnSerLysProGlnProAspAlaAlaThrAlaLeuAlaIleThrAlaAspSerGluThrLeuProGluSerGluLysTyrAsnProGlyProGlnAspPheLeuLeuLysMetProGlyValAsnAlaLysAsnCysArgSerLeuMetHisHisValLysAsnIleAlaGluLeuAlaAlaLeuSerGlnAspGluLeuThrSerIleLeuGlyAsnAlaAlaAsnAlaLysGlnLeuTyrAspPheIleHisThrSerPheAlaGluValValSerLysGlyLysGlyLysLysTer" }, "referenceSequence": "http://reg.genome.network/refseq/RS696357", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000311895.8:c.856C>T" }, "RefSeq": { "hgvs": "NM_005236.3:c.856C>T" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000310520.7:p.Gln286Ter" }, "RefSeq": { "hgvs": "NP_005227.1:p.Gln286Ter" } } } } ], "type": "nucleotide" }