{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA6405489",
  "communityStandardTitle": [
    "NM_001065.4(TNFRSF1A):c.482A>G (p.Lys161Arg)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=799725[alleleid]",
        "alleleId": 799725,
        "preferredName": "NM_001065.4(TNFRSF1A):c.482A>G (p.Lys161Arg)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/811764",
        "RCV": [
          "RCV001002106",
          "RCV001047147",
          "RCV001683721"
        ],
        "variationId": 811764
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/12-6442304-T-C",
        "id": "12-6442304-T-C",
        "variant": "12:6442304 T / C"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.6442304T>C?assembly=hg19",
        "id": "chr12:g.6442304T>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr12:g.6333138T>C?assembly=hg38",
        "id": "chr12:g.6333138T>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/578112440",
        "rs": 578112440
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/12-6442304-T-C?dataset=gnomad_r2_1",
        "id": "12-6442304-T-C",
        "variant": "12:6442304 T / C"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/12-6333138-T-C?dataset=gnomad_r3",
        "id": "12-6333138-T-C",
        "variant": "12:6333138 T / C"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/12-6333138-T-C?dataset=gnomad_r4",
        "id": "12-6333138-T-C",
        "variant": "12:6333138 T / C"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "C",
          "end": 6333138,
          "referenceAllele": "T",
          "start": 6333137
        }
      ],
      "hgvs": [
        "NC_000012.12:g.6333138T>C",
        "CM000674.2:g.6333138T>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000060"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "C",
          "end": 6442304,
          "referenceAllele": "T",
          "start": 6442303
        }
      ],
      "hgvs": [
        "NC_000012.11:g.6442304T>C",
        "CM000674.1:g.6442304T>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000036"
    },
    {
      "chromosome": "12",
      "coordinates": [
        {
          "allele": "C",
          "end": 6312565,
          "referenceAllele": "T",
          "start": 6312564
        }
      ],
      "hgvs": [
        "NC_000012.10:g.6312565T>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000012"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 13958,
          "referenceAllele": "A",
          "start": 13957
        }
      ],
      "hgvs": [
        "NG_007506.1:g.13958A>G",
        "LRG_193:g.13958A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000626"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 516,
          "referenceAllele": "A",
          "start": 515
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000366159.9:n.516A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS904479"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 695,
          "referenceAllele": "A",
          "start": 694
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000437813.8:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513672.1:p.Lys161Arg",
        "hgvsWellDefined": "ENSP00000513672.1:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS904889"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 972,
          "referenceAllele": "A",
          "start": 971
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000440083.7:c.701A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000413224.3:p.Lys234Arg",
        "hgvsWellDefined": "ENSP00000413224.3:p.Lys234Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS904910"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 728,
          "referenceAllele": "A",
          "start": 727
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000535958.2:c.*309A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513673.1:n.*309A>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS905757"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 695,
          "referenceAllele": "A",
          "start": 694
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000698339.1:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513670.1:p.Lys161Arg",
        "hgvsWellDefined": "ENSP00000513670.1:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS909321"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 695,
          "referenceAllele": "A",
          "start": 694
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000698340.1:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000513671.1:p.Lys161Arg",
        "hgvsWellDefined": "ENSP00000513671.1:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS909322"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 744,
          "referenceAllele": "A",
          "start": 743
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000162749.7:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000162749.2:p.Lys161Arg",
        "hgvsWellDefined": "ENSP00000162749.2:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS740051",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000162749.7:c.482A>G"
          },
          "RefSeq": {
            "hgvs": "NM_001065.4:c.482A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000162749.2:p.Lys161Arg"
          },
          "RefSeq": {
            "hgvs": "NP_001056.1:p.Lys161Arg"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 782,
          "referenceAllele": "A",
          "start": 781
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000162749.6:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000162749.2:p.Lys161Arg",
        "hgvsWellDefined": "ENSP00000162749.2:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS247635"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 516,
          "referenceAllele": "A",
          "start": 515
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000366159.8:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000380389.3:p.Lys161Arg",
        "hgvsWellDefined": "ENSP00000380389.3:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS265795"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 443,
          "referenceAllele": "A",
          "start": 442
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000437813.7:n.443A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS294635"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 972,
          "referenceAllele": "A",
          "start": 971
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000440083.6:c.701A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000413224.2:p.Lys234Arg",
        "hgvsWellDefined": "ENSP00000413224.2:p.Lys234Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS295725"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 628,
          "referenceAllele": "A",
          "start": 627
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000534885.5:c.328A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000441803.1:p.Asn110Asp",
        "hgvsWellDefined": "ENSP00000441803.1:p.Asn110Asp"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS359412"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 86,
          "referenceAllele": "A",
          "start": 85
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000537842.5:n.86A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS360989"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 650,
          "referenceAllele": "A",
          "start": 649
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000539372.5:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000442059.1:p.Lys161Arg",
        "hgvsWellDefined": "ENSP00000442059.1:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS361829"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 566,
          "referenceAllele": "A",
          "start": 565
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000540022.5:c.353A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000438343.1:p.Lys118Arg",
        "hgvsWellDefined": "ENSP00000438343.1:p.Lys118Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS362177"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 499,
          "referenceAllele": "A",
          "start": 498
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000543048.5:c.*93A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000439981.1:n.*93A>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS363799"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 478,
          "referenceAllele": "A",
          "start": 477
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "ENST00000543995.5:c.*69A>G"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000442405.1:n.*69A>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS364335"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825396550",
      "coordinates": [
        {
          "allele": "G",
          "end": 785,
          "referenceAllele": "A",
          "start": 784
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NM_001065.3:c.482A>G",
        "LRG_193t1:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001056.1:p.Lys161Arg",
        "hgvsWellDefined": "NP_001056.1:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS009899"
    },
    {
      "@id": "http://reg.genome.network/allele/PA916028769",
      "coordinates": [
        {
          "allele": "G",
          "end": 631,
          "referenceAllele": "A",
          "start": 630
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NM_001346091.1:c.158A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001333020.1:p.Lys53Arg",
        "hgvsWellDefined": "NP_001333020.1:p.Lys53Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS517345"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 785,
          "referenceAllele": "A",
          "start": 784
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NM_001346092.1:c.-96A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001333021.1:n.-96A>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS517346"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 785,
          "referenceAllele": "A",
          "start": 784
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NR_144351.1:n.785A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS529342"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2825396550",
      "coordinates": [
        {
          "allele": "G",
          "end": 744,
          "referenceAllele": "A",
          "start": 743
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NM_001065.4:c.482A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001056.1:p.Lys161Arg",
        "hgvsWellDefined": "NP_001056.1:p.Lys161Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS676122",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000162749.7:c.482A>G"
          },
          "RefSeq": {
            "hgvs": "NM_001065.4:c.482A>G"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000162749.2:p.Lys161Arg"
          },
          "RefSeq": {
            "hgvs": "NP_001056.1:p.Lys161Arg"
          }
        }
      }
    },
    {
      "@id": "http://reg.genome.network/allele/PA916028769",
      "coordinates": [
        {
          "allele": "G",
          "end": 590,
          "referenceAllele": "A",
          "start": 589
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NM_001346091.2:c.158A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001333020.1:p.Lys53Arg",
        "hgvsWellDefined": "NP_001333020.1:p.Lys53Arg"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS687247"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 744,
          "referenceAllele": "A",
          "start": 743
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NM_001346092.2:c.-96A>G"
      ],
      "proteinEffect": {
        "hgvs": "NP_001333021.1:n.-96A>G"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS687248"
    },
    {
      "coordinates": [
        {
          "allele": "G",
          "end": 744,
          "referenceAllele": "A",
          "start": 743
        }
      ],
      "gene": "http://reg.genome.network/gene/GN011916",
      "geneNCBI_id": 7132,
      "geneSymbol": "TNFRSF1A",
      "hgvs": [
        "NR_144351.2:n.744A>G"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS704110"
    }
  ],
  "type": "nucleotide"
}