{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA5167874",
  "communityStandardTitle": [
    "NM_005502.4(ABCA1):c.5376C>T (p.Thr1792=)"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=310471[alleleid]",
        "alleleId": 310471,
        "preferredName": "NM_005502.4(ABCA1):c.5376C>T (p.Thr1792=)"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/364392",
        "RCV": [
          "RCV000279665",
          "RCV000341656",
          "RCV001584093",
          "RCV002348117",
          "RCV001731637"
        ],
        "variationId": 364392
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/9-107558340-G-A",
        "id": "9-107558340-G-A",
        "variant": "9:107558340 G / A"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr9:g.107558340G>A?assembly=hg19",
        "id": "chr9:g.107558340G>A"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr9:g.104796059G>A?assembly=hg38",
        "id": "chr9:g.104796059G>A"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/13306077",
        "rs": 13306077
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/9-107558340-G-A?dataset=gnomad_r2_1",
        "id": "9-107558340-G-A",
        "variant": "9:107558340 G / A"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/9-104796059-G-A?dataset=gnomad_r3",
        "id": "9-104796059-G-A",
        "variant": "9:104796059 G / A"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/9-104796059-G-A?dataset=gnomad_r4",
        "id": "9-104796059-G-A",
        "variant": "9:104796059 G / A"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "9",
      "coordinates": [
        {
          "allele": "A",
          "end": 104796059,
          "referenceAllele": "G",
          "start": 104796058
        }
      ],
      "hgvs": [
        "NC_000009.12:g.104796059G>A",
        "CM000671.2:g.104796059G>A"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000057"
    },
    {
      "chromosome": "9",
      "coordinates": [
        {
          "allele": "A",
          "end": 107558340,
          "referenceAllele": "G",
          "start": 107558339
        }
      ],
      "hgvs": [
        "NC_000009.11:g.107558340G>A",
        "CM000671.1:g.107558340G>A"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000033"
    },
    {
      "chromosome": "9",
      "coordinates": [
        {
          "allele": "A",
          "end": 106598161,
          "referenceAllele": "G",
          "start": 106598160
        }
      ],
      "hgvs": [
        "NC_000009.10:g.106598161G>A"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000009"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 137097,
          "referenceAllele": "C",
          "start": 137096
        }
      ],
      "hgvs": [
        "NG_007981.1:g.137097C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000749"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5689,
          "referenceAllele": "C",
          "start": 5688
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "ENST00000374736.8:c.5376C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000363868.3:p.Thr1792="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS751486",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000374736.8:c.5376C>T"
          },
          "RefSeq": {
            "hgvs": "NM_005502.4:c.5376C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000363868.3:p.Thr1792="
          },
          "RefSeq": {
            "hgvs": "NP_005493.2:p.Thr1792="
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5695,
          "referenceAllele": "C",
          "start": 5694
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "ENST00000678995.1:c.5382C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000504612.1:p.Thr1794="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS778630"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5771,
          "referenceAllele": "C",
          "start": 5770
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "ENST00000374736.7:c.5376C>T"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000363868.3:p.Thr1792="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS270385"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829592617",
      "coordinates": [
        {
          "allele": "T",
          "end": 5780,
          "referenceAllele": "C",
          "start": 5779
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "NM_005502.3:c.5376C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_005493.2:p.Thr1792="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS030593"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5695,
          "referenceAllele": "C",
          "start": 5694
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_005251773.1:c.5382C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005251830.1:p.Thr1794="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS059669"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5535,
          "referenceAllele": "C",
          "start": 5534
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_005251776.1:c.5202C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005251833.1:p.Thr1734="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS059670"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5770,
          "referenceAllele": "C",
          "start": 5769
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518339.1:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516641.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS085513"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5766,
          "referenceAllele": "C",
          "start": 5765
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518340.1:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516642.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS085514"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5764,
          "referenceAllele": "C",
          "start": 5763
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518341.1:c.5451C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516643.1:p.Thr1817="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS085515"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5473,
          "referenceAllele": "C",
          "start": 5472
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518342.1:c.5019C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516644.1:p.Thr1673="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS085516"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5770,
          "referenceAllele": "C",
          "start": 5769
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518343.1:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516645.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS085517"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5695,
          "referenceAllele": "C",
          "start": 5694
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_005251773.3:c.5382C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005251830.1:p.Thr1794="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS533666"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5535,
          "referenceAllele": "C",
          "start": 5534
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_005251776.3:c.5202C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_005251833.1:p.Thr1734="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS533667"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5770,
          "referenceAllele": "C",
          "start": 5769
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518339.3:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516641.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS544871"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5985,
          "referenceAllele": "C",
          "start": 5984
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518340.3:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516642.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS544872"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5764,
          "referenceAllele": "C",
          "start": 5763
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518341.3:c.5451C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516643.1:p.Thr1817="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS544873"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5472,
          "referenceAllele": "C",
          "start": 5471
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_011518342.3:c.5019C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_011516644.1:p.Thr1673="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS544874"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5969,
          "referenceAllele": "C",
          "start": 5968
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_017014378.2:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016869867.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS567389"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 6376,
          "referenceAllele": "C",
          "start": 6375
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_017014379.2:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016869868.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS567390"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5702,
          "referenceAllele": "C",
          "start": 5701
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_017014380.2:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016869869.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS567391"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5768,
          "referenceAllele": "C",
          "start": 5767
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_017014381.2:c.5457C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016869870.1:p.Thr1819="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS567392"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 6233,
          "referenceAllele": "C",
          "start": 6232
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XM_017014382.2:c.5319C>T"
      ],
      "proteinEffect": {
        "hgvs": "XP_016869871.1:p.Thr1773="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS567393"
    },
    {
      "coordinates": [
        {
          "allele": "T",
          "end": 5770,
          "referenceAllele": "C",
          "start": 5769
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "XR_001746223.1:n.5770C>T"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS594577"
    },
    {
      "@id": "http://reg.genome.network/allele/PA2829592617",
      "coordinates": [
        {
          "allele": "T",
          "end": 5689,
          "referenceAllele": "C",
          "start": 5688
        }
      ],
      "gene": "http://reg.genome.network/gene/GN000029",
      "geneNCBI_id": 19,
      "geneSymbol": "ABCA1",
      "hgvs": [
        "NM_005502.4:c.5376C>T"
      ],
      "proteinEffect": {
        "hgvs": "NP_005493.2:p.Thr1792="
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS666998",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000374736.8:c.5376C>T"
          },
          "RefSeq": {
            "hgvs": "NM_005502.4:c.5376C>T"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000363868.3:p.Thr1792="
          },
          "RefSeq": {
            "hgvs": "NP_005493.2:p.Thr1792="
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}