{ "@context": "http://reg.genome.network/schema/allele.jsonld", "@id": "http://reg.genome.network/allele/CA5058950", "communityStandardTitle": [ "NM_012203.2(GRHPR):c.181G>A (p.Asp61Asn)" ], "externalRecords": { "ClinVarAlleles": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=1882905[alleleid]", "alleleId": 1882905, "preferredName": "NM_012203.2(GRHPR):c.181G>A (p.Asp61Asn)" } ], "ClinVarVariations": [ { "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/2155337", "RCV": [ "RCV003072288", "RCV003447334" ], "variationId": 2155337 } ], "ExAC": [ { "@id": "http://exac.broadinstitute.org/variant/9-37424939-G-A", "id": "9-37424939-G-A", "variant": "9:37424939 G / A" } ], "MyVariantInfo_hg19": [ { "@id": "http://myvariant.info/v1/variant/chr9:g.37424939G>A?assembly=hg19", "id": "chr9:g.37424939G>A" } ], "MyVariantInfo_hg38": [ { "@id": "http://myvariant.info/v1/variant/chr9:g.37424942G>A?assembly=hg38", "id": "chr9:g.37424942G>A" } ], "dbSNP": [ { "@id": "http://www.ncbi.nlm.nih.gov/snp/371660673", "rs": 371660673 } ], "gnomAD_2": [ { "@id": "http://gnomad.broadinstitute.org/variant/9-37424939-G-A?dataset=gnomad_r2_1", "id": "9-37424939-G-A", "variant": "9:37424939 G / A" } ], "gnomAD_3": [ { "@id": "http://gnomad.broadinstitute.org/variant/9-37424942-G-A?dataset=gnomad_r3", "id": "9-37424942-G-A", "variant": "9:37424942 G / A" } ], "gnomAD_4": [ { "@id": "http://gnomad.broadinstitute.org/variant/9-37424942-G-A?dataset=gnomad_r4", "id": "9-37424942-G-A", "variant": "9:37424942 G / A" } ] }, "genomicAlleles": [ { "chromosome": "9", "coordinates": [ { "allele": "A", "end": 37424942, "referenceAllele": "G", "start": 37424941 } ], "hgvs": [ "NC_000009.12:g.37424942G>A", "CM000671.2:g.37424942G>A" ], "referenceGenome": "GRCh38", "referenceSequence": "http://reg.genome.network/refseq/RS000057" }, { "chromosome": "9", "coordinates": [ { "allele": "A", "end": 37424939, "referenceAllele": "G", "start": 37424938 } ], "hgvs": [ "NC_000009.11:g.37424939G>A", "CM000671.1:g.37424939G>A" ], "referenceGenome": "GRCh37", "referenceSequence": "http://reg.genome.network/refseq/RS000033" }, { "chromosome": "9", "coordinates": [ { "allele": "A", "end": 37414939, "referenceAllele": "G", "start": 37414938 } ], "hgvs": [ "NC_000009.10:g.37414939G>A" ], "referenceGenome": "NCBI36", "referenceSequence": "http://reg.genome.network/refseq/RS000009" }, { "coordinates": [ { "allele": "A", "end": 7233, "referenceAllele": "G", "start": 7232 } ], "hgvs": [ "NG_008135.1:g.7233G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS000881" } ], "transcriptAlleles": [ { "coordinates": [ { "allele": "A", "end": 236, "referenceAllele": "G", "start": 235 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000318158.11:c.181G>A" ], "proteinEffect": { "hgvs": "ENSP00000313432.6:p.Asp61Asn", "hgvsWellDefined": "ENSP00000313432.6:p.Asp61Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS746197", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000318158.11:c.181G>A" }, "RefSeq": { "hgvs": "NM_012203.2:c.181G>A" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000313432.6:p.Asp61Asn" }, "RefSeq": { "hgvs": "NP_036335.1:p.Asp61Asn" } } } }, { "coordinates": [ { "allele": "A", "end": 266, "referenceAllele": "G", "start": 265 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000318158.10:c.181G>A" ], "proteinEffect": { "hgvs": "ENSP00000313432.6:p.Asp61Asn", "hgvsWellDefined": "ENSP00000313432.6:p.Asp61Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS257492" }, { "coordinates": [ { "allele": "A", "end": 218, "referenceAllele": "G", "start": 217 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000377824.8:n.218G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS271754" }, { "coordinates": [ { "allele": "A", "end": 208, "referenceAllele": "G", "start": 207 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000460882.5:n.208G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS305526" }, { "coordinates": [ { "allele": "A", "end": 190, "referenceAllele": "G", "start": 189 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000487399.5:n.190G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS325976" }, { "coordinates": [ { "allele": "A", "end": 109, "endIntronDirection": "+", "endIntronOffset": 2109, "referenceAllele": "G", "start": 109, "startIntronDirection": "+", "startIntronOffset": 2108 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000491488.5:n.109+2109G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS329080" }, { "coordinates": [ { "allele": "A", "end": 238, "referenceAllele": "G", "start": 237 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000493368.5:n.238G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS330532" }, { "coordinates": [ { "allele": "A", "end": 186, "referenceAllele": "G", "start": 185 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "ENST00000607784.1:c.181G>A" ], "proteinEffect": { "hgvs": "ENSP00000475569.1:p.Asp61Asn", "hgvsWellDefined": "ENSP00000475569.1:p.Asp61Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS399944" }, { "@id": "http://reg.genome.network/allele/PA2580373280", "coordinates": [ { "allele": "A", "end": 222, "referenceAllele": "G", "start": 221 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "NM_012203.1:c.181G>A" ], "proteinEffect": { "hgvs": "NP_036335.1:p.Asp61Asn", "hgvsWellDefined": "NP_036335.1:p.Asp61Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS032392" }, { "coordinates": [ { "allele": "A", "end": 138, "endIntronDirection": "+", "endIntronOffset": 2109, "referenceAllele": "G", "start": 138, "startIntronDirection": "+", "startIntronOffset": 2108 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XM_005251631.1:c.83+2109G>A" ], "proteinEffect": { "hgvs": "XP_005251688.1:n.83+2109G>A" }, "referenceSequence": "http://reg.genome.network/refseq/RS059608" }, { "coordinates": [ { "allele": "A", "end": 212, "referenceAllele": "G", "start": 211 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XM_011518073.1:c.-582G>A" ], "proteinEffect": { "hgvs": "XP_011516375.1:n.-582G>A" }, "referenceSequence": "http://reg.genome.network/refseq/RS085252" }, { "coordinates": [ { "allele": "A", "end": 266, "referenceAllele": "G", "start": 265 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XR_929374.1:n.266G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS125523" }, { "coordinates": [ { "allele": "A", "end": 237, "referenceAllele": "G", "start": 236 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XM_017015320.2:c.181G>A" ], "proteinEffect": { "hgvs": "XP_016870809.1:p.Asp61Asn", "hgvsWellDefined": "XP_016870809.1:p.Asp61Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS568069" }, { "coordinates": [ { "allele": "A", "end": 237, "referenceAllele": "G", "start": 236 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XM_017015321.2:c.181G>A" ], "proteinEffect": { "hgvs": "XP_016870810.1:p.Asp61Asn", "hgvsWellDefined": "XP_016870810.1:p.Asp61Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS568070" }, { "coordinates": [ { "allele": "A", "end": 237, "referenceAllele": "G", "start": 236 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XM_017015323.2:c.-582G>A" ], "proteinEffect": { "hgvs": "XP_016870812.1:n.-582G>A" }, "referenceSequence": "http://reg.genome.network/refseq/RS568071" }, { "coordinates": [ { "allele": "A", "end": 469, "referenceAllele": "G", "start": 468 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XM_024447716.1:c.454G>A" ], "proteinEffect": { "hgvs": "XP_024303484.1:p.Asp152Asn", "hgvsWellDefined": "XP_024303484.1:p.Asp152Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS581297" }, { "coordinates": [ { "allele": "A", "end": 469, "referenceAllele": "G", "start": 468 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XM_024447717.1:c.454G>A" ], "proteinEffect": { "hgvs": "XP_024303485.1:p.Asp152Asn", "hgvsWellDefined": "XP_024303485.1:p.Asp152Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS581298" }, { "coordinates": [ { "allele": "A", "end": 469, "referenceAllele": "G", "start": 468 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XR_002956828.1:n.469G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS602966" }, { "coordinates": [ { "allele": "A", "end": 469, "referenceAllele": "G", "start": 468 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XR_002956829.1:n.469G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS602967" }, { "coordinates": [ { "allele": "A", "end": 240, "referenceAllele": "G", "start": 239 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XR_002956830.1:n.240G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS602968" }, { "coordinates": [ { "allele": "A", "end": 138, "endIntronDirection": "+", "endIntronOffset": 2109, "referenceAllele": "G", "start": 138, "startIntronDirection": "+", "startIntronOffset": 2108 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XR_002956831.1:n.138+2109G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS602969" }, { "coordinates": [ { "allele": "A", "end": 240, "referenceAllele": "G", "start": 239 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "XR_002956832.1:n.240G>A" ], "referenceSequence": "http://reg.genome.network/refseq/RS602970" }, { "@id": "http://reg.genome.network/allele/PA2580373280", "coordinates": [ { "allele": "A", "end": 236, "referenceAllele": "G", "start": 235 } ], "gene": "http://reg.genome.network/gene/GN004570", "geneNCBI_id": 9380, "geneSymbol": "GRHPR", "hgvs": [ "NM_012203.2:c.181G>A" ], "proteinEffect": { "hgvs": "NP_036335.1:p.Asp61Asn", "hgvsWellDefined": "NP_036335.1:p.Asp61Asn" }, "referenceSequence": "http://reg.genome.network/refseq/RS667943", "MANE": { "maneVersion": "1.3", "maneStatus": "MANE Select", "nucleotide": { "Ensembl": { "hgvs": "ENST00000318158.11:c.181G>A" }, "RefSeq": { "hgvs": "NM_012203.2:c.181G>A" } }, "protein": { "Ensembl": { "hgvs": "ENSP00000313432.6:p.Asp61Asn" }, "RefSeq": { "hgvs": "NP_036335.1:p.Asp61Asn" } } } } ], "type": "nucleotide" }