{
  "@context": "http://reg.genome.network/schema/allele.jsonld",
  "@id": "http://reg.genome.network/allele/CA4346923",
  "communityStandardTitle": [
    "NM_000089.4(COL1A2):c.1036-3T>C"
  ],
  "externalRecords": {
    "ClinVarAlleles": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/?term=537822[alleleid]",
        "alleleId": 537822,
        "preferredName": "NM_000089.4(COL1A2):c.1036-3T>C"
      }
    ],
    "ClinVarVariations": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/clinvar/variation/547238",
        "RCV": [
          "RCV000659373",
          "RCV000842274",
          "RCV001535468",
          "RCV002235526"
        ],
        "variationId": 547238
      }
    ],
    "ExAC": [
      {
        "@id": "http://exac.broadinstitute.org/variant/7-94039551-T-C",
        "id": "7-94039551-T-C",
        "variant": "7:94039551 T / C"
      }
    ],
    "MyVariantInfo_hg19": [
      {
        "@id": "http://myvariant.info/v1/variant/chr7:g.94039551T>C?assembly=hg19",
        "id": "chr7:g.94039551T>C"
      }
    ],
    "MyVariantInfo_hg38": [
      {
        "@id": "http://myvariant.info/v1/variant/chr7:g.94410239T>C?assembly=hg38",
        "id": "chr7:g.94410239T>C"
      }
    ],
    "dbSNP": [
      {
        "@id": "http://www.ncbi.nlm.nih.gov/snp/370275593",
        "rs": 370275593
      }
    ],
    "gnomAD_2": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/7-94039551-T-C?dataset=gnomad_r2_1",
        "id": "7-94039551-T-C",
        "variant": "7:94039551 T / C"
      }
    ],
    "gnomAD_3": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/7-94410239-T-C?dataset=gnomad_r3",
        "id": "7-94410239-T-C",
        "variant": "7:94410239 T / C"
      }
    ],
    "gnomAD_4": [
      {
        "@id": "http://gnomad.broadinstitute.org/variant/7-94410239-T-C?dataset=gnomad_r4",
        "id": "7-94410239-T-C",
        "variant": "7:94410239 T / C"
      }
    ]
  },
  "genomicAlleles": [
    {
      "chromosome": "7",
      "coordinates": [
        {
          "allele": "C",
          "end": 94410239,
          "referenceAllele": "T",
          "start": 94410238
        }
      ],
      "hgvs": [
        "NC_000007.14:g.94410239T>C",
        "CM000669.2:g.94410239T>C"
      ],
      "referenceGenome": "GRCh38",
      "referenceSequence": "http://reg.genome.network/refseq/RS000055"
    },
    {
      "chromosome": "7",
      "coordinates": [
        {
          "allele": "C",
          "end": 94039551,
          "referenceAllele": "T",
          "start": 94039550
        }
      ],
      "hgvs": [
        "NC_000007.13:g.94039551T>C",
        "CM000669.1:g.94039551T>C"
      ],
      "referenceGenome": "GRCh37",
      "referenceSequence": "http://reg.genome.network/refseq/RS000031"
    },
    {
      "chromosome": "7",
      "coordinates": [
        {
          "allele": "C",
          "end": 93877487,
          "referenceAllele": "T",
          "start": 93877486
        }
      ],
      "hgvs": [
        "NC_000007.12:g.93877487T>C"
      ],
      "referenceGenome": "NCBI36",
      "referenceSequence": "http://reg.genome.network/refseq/RS000007"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 20679,
          "referenceAllele": "T",
          "start": 20678
        }
      ],
      "hgvs": [
        "NG_007405.1:g.20679T>C",
        "LRG_2:g.20679T>C"
      ],
      "referenceSequence": "http://reg.genome.network/refseq/RS000570"
    }
  ],
  "transcriptAlleles": [
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1172,
          "endIntronDirection": "-",
          "endIntronOffset": 2,
          "referenceAllele": "T",
          "start": 1172,
          "startIntronDirection": "-",
          "startIntronOffset": 3
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002198",
      "geneNCBI_id": 1278,
      "geneSymbol": "COL1A2",
      "hgvs": [
        "ENST00000297268.11:c.1036-3T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000297268.6:n.1036-3T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS744510",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000297268.11:c.1036-3T>C"
          },
          "RefSeq": {
            "hgvs": "NM_000089.4:c.1036-3T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000297268.6:n.1036-3T>C"
          },
          "RefSeq": {
            "hgvs": "NP_000080.2:n.1036-3T>C"
          }
        }
      }
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1506,
          "endIntronDirection": "-",
          "endIntronOffset": 2,
          "referenceAllele": "T",
          "start": 1506,
          "startIntronDirection": "-",
          "startIntronOffset": 3
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002198",
      "geneNCBI_id": 1278,
      "geneSymbol": "COL1A2",
      "hgvs": [
        "ENST00000297268.10:c.1036-3T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000297268.6:n.1036-3T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS254445"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1147,
          "endIntronDirection": "-",
          "endIntronOffset": 2,
          "referenceAllele": "T",
          "start": 1147,
          "startIntronDirection": "-",
          "startIntronOffset": 3
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002198",
      "geneNCBI_id": 1278,
      "geneSymbol": "COL1A2",
      "hgvs": [
        "ENST00000620463.1:c.1030-3T>C"
      ],
      "proteinEffect": {
        "hgvs": "ENSP00000477719.1:n.1030-3T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS404843"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1506,
          "endIntronDirection": "-",
          "endIntronOffset": 2,
          "referenceAllele": "T",
          "start": 1506,
          "startIntronDirection": "-",
          "startIntronOffset": 3
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002198",
      "geneNCBI_id": 1278,
      "geneSymbol": "COL1A2",
      "hgvs": [
        "NM_000089.3:c.1036-3T>C",
        "LRG_2t1:c.1036-3T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000080.2:n.1036-3T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS006153"
    },
    {
      "coordinates": [
        {
          "allele": "C",
          "end": 1172,
          "endIntronDirection": "-",
          "endIntronOffset": 2,
          "referenceAllele": "T",
          "start": 1172,
          "startIntronDirection": "-",
          "startIntronOffset": 3
        }
      ],
      "gene": "http://reg.genome.network/gene/GN002198",
      "geneNCBI_id": 1278,
      "geneSymbol": "COL1A2",
      "hgvs": [
        "NM_000089.4:c.1036-3T>C"
      ],
      "proteinEffect": {
        "hgvs": "NP_000080.2:n.1036-3T>C"
      },
      "referenceSequence": "http://reg.genome.network/refseq/RS674696",
      "MANE": {
        "maneVersion": "1.3",
        "maneStatus": "MANE Select",
        "nucleotide": {
          "Ensembl": {
            "hgvs": "ENST00000297268.11:c.1036-3T>C"
          },
          "RefSeq": {
            "hgvs": "NM_000089.4:c.1036-3T>C"
          }
        },
        "protein": {
          "Ensembl": {
            "hgvs": "ENSP00000297268.6:n.1036-3T>C"
          },
          "RefSeq": {
            "hgvs": "NP_000080.2:n.1036-3T>C"
          }
        }
      }
    }
  ],
  "type": "nucleotide"
}